RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 CDH13P55290 713 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 MRPS22P82650 360 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 MS4A2Q01362 244 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 SLC14A2Q15849 920 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 ZNF423Q2M1K9 1284 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 PIGGQ5H8A4 983 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 NSMCE3Q96MG7 304 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 EFCAB1Q9HAE3 211 aa18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 PRPF19Q9UMS4 504 aaKnown RBP18.4■□□□□ 0.54
SHKBP1-201ENST00000291842 CCDC189A1A4V9 331 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 F5H5T6 163 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 ATF6P18850 670 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 RPS24P62847 133 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 FLOT2Q14254 428 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 GPNMBQ14956 572 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PDSS2Q86YH6 399 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PHC3Q8NDX5 983 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 SERPINI1Q99574 410 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 KLHL4Q9C0H6 718 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 NACA2Q9H009 215 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 GSTO2Q9H4Y5 243 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 EML4Q9HC35 981 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 TRPC7Q9HCX4 862 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 ZFP37Q9Y6Q3 630 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 LRRC14BA6NHZ5 514 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PPP6CO00743 305 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 RGRP47804 291 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 TIAL1Q01085 375 aaKnown RBP eCLIP18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 RNF220Q5VTB9 566 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 SETD3Q86TU7 594 aaPredicted RBP18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PGAM4Q8N0Y7 254 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PELI3Q8N2H9 469 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PCDH20Q8N6Y1 951 aaKnown RBP18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 HMGCLL1Q8TB92 370 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 CCDC126Q96EE4 140 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 VCXQ9H320 206 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 PDFQ9HBH1 243 aa18.39■□□□□ 0.53
SHKBP1-201ENST00000291842 MAGEA13PA6NCF6 341 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 SLC38A8A6NNN8 435 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 SLC22A2O15244 555 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 GJB5O95377 273 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 YBEYP58557 167 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 TCTN1Q2MV58 587 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 GRAMD1BQ3KR37 738 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 CD99L2Q8TCZ2 262 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 BCL7CQ8WUZ0 217 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 CCDC167Q9P0B6 97 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 TRAF6Q9Y4K3 522 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 TET1Q8NFU7 2136 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 MOXD2PA6NHM9 499 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 RNASEH1O60930 286 aaKnown RBP18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 SIX3O95343 332 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 WISP3O95389 354 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 IMPDH1P20839 514 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 MAPKAPK2P49137 400 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 SCNN1BP51168 640 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 RING1Q06587 406 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 OR52E8Q6IFG1 317 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 FAM45BPQ6NSW5 357 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 BHLHE22Q8NFJ8 381 aaPredicted RBP18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 FAM45AQ8TCE6 357 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 FEM1CQ96JP0 617 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 TUBGCP5Q96RT8 1024 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 MEAF6Q9HAF1 191 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 SRRDQ9UH36 339 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 LRFN2Q9ULH4 789 aa18.38■□□□□ 0.53
SHKBP1-201ENST00000291842 UBDO15205 165 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 FGF1P05230 155 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 LYNP07948 512 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 SERPINF2P08697 491 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 HLA-DPA1P20036 260 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 HOXD9P28356 352 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 PMLP29590 882 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 ADSLP30566 484 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 TNK2Q07912 1038 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 AGKQ53H12 422 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 FBXO48Q5FWF7 155 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 ZNF678Q5SXM1 525 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 DENND1CQ8IV53 801 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 RAET1EQ8TD07 263 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 SPATA17Q96L03 361 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 ZNF512Q96ME7 567 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 FBRSL1Q9HCM7 1045 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 POLR3BQ9NW08 1133 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 ADA2Q9NZK5 511 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 FNDC3AQ9Y2H6 1198 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 SPO11Q9Y5K1 396 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 LAMA2P24043 3122 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 UBA6A0AVT1 1052 aaPredicted RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 UBXN8O00124 270 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 RPP40O75818 363 aaKnown RBP18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 CD1DP15813 335 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 SELPP16109 830 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 FDXRP22570 491 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 PEX19P40855 299 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 SGSHP51688 502 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 GNA12Q03113 381 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 HERC3Q15034 1050 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 UNC50Q53HI1 259 aa18.37■□□□□ 0.53
SHKBP1-201ENST00000291842 SLC22A9Q8IVM8 553 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms