RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 MT-ND1P03886 318 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 KCNE1P15382 129 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 CES1P23141 567 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 ATP5F1P24539 256 aaPredicted RBP10.09□□□□□ -0.79
LIG3-201ENST00000262327 LRPAP1P30533 357 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 BRCC3P46736 316 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 CSRP3P50461 194 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 HTRA3P83110 453 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 KIF19Q2TAC6 998 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 GPR158Q5T848 1215 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 IFNEQ86WN2 208 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 ARHGAP12Q8IWW6 846 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 LZICQ8WZA0 190 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 MYLPFQ96A32 169 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 TMLHEQ9NVH6 421 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 TCAF1Q9Y4C2 921 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 V9GYQ6 96 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 F8W810 466 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 TMX2-CTNND1H3BSU7 103 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 NR5A2O00482 541 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 SOCS2O14508 198 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 GABRDO14764 452 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 PIRTP0C851 137 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 SCNN1GP51170 649 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 NDST2P52849 883 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 OXCT1P55809 520 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 PHEXP78562 749 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 SCAPQ12770 1279 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 LRP8Q14114 963 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 SDHAF4Q5VUM1 108 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 C14orf80Q86SX3 495 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 NUP93Q8N1F7 819 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 CATSPER1Q8NEC5 780 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 ASB9Q96DX5 294 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 MRGPRX2Q96LB1 330 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 KCNA7Q96RP8 456 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 SLC9A7Q96T83 725 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 MRPL57Q9BQC6 102 aaKnown RBP10.09□□□□□ -0.79
LIG3-201ENST00000262327 PIF1Q9H611 641 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 ZNF696Q9H7X3 374 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 CNGB3Q9NQW8 809 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 INIPQ9NRY2 104 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 BCAP29Q9UHQ4 241 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 CNOT6Q9ULM6 557 aaKnown RBP10.09□□□□□ -0.79
LIG3-201ENST00000262327 SH3GLB1Q9Y371 365 aa10.09□□□□□ -0.79
LIG3-201ENST00000262327 TRPC5OSA6NMA1 111 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 HHLA1C9JL84 531 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 SLCO1B7G3V0H7 640 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 MTSS1O43312 755 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 MAFKO60675 156 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 PAGE1O75459 146 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CDK4P11802 303 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TMED1Q13445 227 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 UGP2Q16851 508 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TMEM207Q6UWW9 146 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CXCL17Q6UXB2 119 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 ZBTB49Q6ZSB9 765 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 RNF180Q86T96 592 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 LINC00523Q86TU6 105 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CHERPQ8IWX8 916 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 PELI3Q8N2H9 469 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 FAM47BQ8NA70 645 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 DPF3Q92784 378 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TSEN34Q9BSV6 310 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 NT5MQ9NPB1 228 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 AAR2Q9Y312 384 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 CEPT1Q9Y6K0 416 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 ARHGAP10A1A4S6 786 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TRIM43BA6NCK2 446 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 IPO13O94829 963 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 POMCP01189 267 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 SNRPB2P08579 225 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 CDH2P19022 906 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 ATP6V1B2P21281 511 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 AXLP30530 894 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 ARSDP51689 593 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 WNT3AP56704 352 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 APOFQ13790 326 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 KCNA10Q16322 511 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 VPS26BQ4G0F5 336 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 TECRLQ5HYJ1 363 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 SMYD5Q6GMV2 418 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 CYHR1Q6ZMK1 362 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 PIWIL4Q7Z3Z4 852 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 LIMS2Q7Z4I7 341 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 RETREG3Q86VR2 466 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 SPPL2CQ8IUH8 684 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 DLG3Q92796 817 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 PABPC5Q96DU9 382 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 ZFRQ96KR1 1074 aaKnown RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 FCRL2Q96LA5 508 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 DCUN1D5Q9BTE7 237 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 DNAI2Q9GZS0 605 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 UNC93B1Q9H1C4 597 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 SOX17Q9H6I2 414 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 NDUFA13Q9P0J0 144 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 MARCH4Q9P2E8 410 aaPredicted RBP10.08□□□□□ -0.8
LIG3-201ENST00000262327 CIDEBQ9UHD4 219 aa10.08□□□□□ -0.8
LIG3-201ENST00000262327 VPS28Q9UK41 221 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms