RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 HERC3Q15034 1050 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 MEP1AQ16819 746 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CCDC81Q6ZN84 652 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 AGBL3Q8NEM8 1001 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 COPS5Q92905 334 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 C9orf16Q9BUW7 83 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SMARCAD1Q9H4L7 1026 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 ALG9Q9H6U8 611 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 AGPAT4Q9NRZ5 378 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 RIC8BQ9NVN3 520 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 MAP10Q9P2G4 905 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 ATP11BQ9Y2G3 1177 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 NOX1Q9Y5S8 564 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 KIAA1217Q5T5P2 1943 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SOBPA7XYQ1 873 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 UBFD1O14562 309 aaKnown RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 MAFO75444 373 aaPredicted RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 NPM3O75607 178 aaKnown RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 LINC00032P0C843 101 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 ERCC2P18074 760 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 MAGEA12P43365 314 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CHRNA4P43681 627 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SQLEQ14534 574 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 INAVAQ3KP66 663 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 TIGD2Q4W5G0 525 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 C4orf22Q6V702 233 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 PELI3Q8N2H9 469 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 NPWQ8N729 165 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 PSMA8Q8TAA3 256 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CENPNQ96H22 339 aaPredicted RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 FDXACB1Q9BRP7 624 aaPredicted RBP14.41□□□□□ -0.1
SDC1-201ENST00000254351 FUNDC2Q9BWH2 189 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 CMTM6Q9NX76 183 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 ADAM28Q9UKQ2 775 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 TRAF6Q9Y4K3 522 aa14.41□□□□□ -0.1
SDC1-201ENST00000254351 SLCO1B7G3V0H7 640 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 MAFGO15525 162 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 H2AFYO75367 372 aaKnown RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 AGXTP21549 392 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 CD68P34810 354 aaPredicted RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 ADAM17P78536 824 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 ABI1Q8IZP0 508 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 OR52K2Q8NGK3 314 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 SLC2A14Q8TDB8 520 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 TRPC4APQ8TEL6 797 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 C17orf50Q8WW18 174 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 TRUB1Q8WWH5 349 aaKnown RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 SNX27Q96L92 541 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 SEZ6LQ9BYH1 1024 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 ABCB10Q9NRK6 738 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 UTP6Q9NYH9 597 aaKnown RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP14.4□□□□□ -0.1
SDC1-201ENST00000254351 MID2Q9UJV3 735 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 ACOX3O15254 700 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 BCAS1O75363 584 aaPredicted RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 INMTO95050 263 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 AP2A1O95782 977 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 ARL1P40616 181 aaPredicted RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 SLC1A2P43004 574 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 FOXA1P55317 472 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 SH3RF2Q8TEC5 729 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 SLC35F5Q8WV83 523 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 GLMNQ92990 594 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 C18orf25Q96B23 403 aaPredicted RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 SH3YL1Q96HL8 342 aaPredicted RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 CDHR1Q96JP9 859 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 GPR22Q99680 433 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 AKTIPQ9H8T0 292 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 SMURF2Q9HAU4 748 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 KIAA1522Q9P206 1035 aaPredicted RBP14.4□□□□□ -0.1
SDC1-201ENST00000254351 PSME2Q9UL46 239 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 TMED5Q9Y3A6 229 aa14.4□□□□□ -0.1
SDC1-201ENST00000254351 H0Y858 1186 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ACKR2O00590 384 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 CCT8P50990 548 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 GALNT2Q10471 571 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 MAPRE2Q15555 327 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 IQSEC1Q6DN90 963 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 HFE2Q6ZVN8 426 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 SLC22A16Q86VW1 577 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 LGI2Q8N0V4 545 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 OR10Q1Q8NGQ4 319 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 SLC7A14Q8TBB6 771 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 TUBGCP3Q96CW5 907 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 RHOJQ9H4E5 214 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 AKT3Q9Y243 479 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 U3KQV3 271 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 FAM155AB1AL88 458 aaPredicted RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 DFFAO00273 331 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 CAPN15O75808 1086 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 TCF3P15923 654 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ITGB6P18564 788 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 GSSP48637 474 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ACADVLP49748 655 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 DIO3P55073 304 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 VBP1P61758 197 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 INAQ16352 499 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ARHGAP36Q6ZRI8 547 aa14.39□□□□□ -0.11
SDC1-201ENST00000254351 ZNF420Q8TAQ5 688 aaPredicted RBP14.39□□□□□ -0.11
SDC1-201ENST00000254351 RDH11Q8TC12 318 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms