RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 FAM162AQ96A26 154 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 SPATS2LQ9NUQ6 558 aaKnown RBP13.69□□□□□ -0.22
LDLR-201ENST00000252444 DTLQ9NZJ0 730 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 TMEM59LQ9UK28 342 aa13.69□□□□□ -0.22
LDLR-201ENST00000252444 BBIP1A8MTZ0 92 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 RNF225M0QZC1 329 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 PRAMEF11O60813 436 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 KCNA4P22459 653 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PBLDP30039 288 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 NCALDP61601 193 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 FRG1Q14331 258 aaKnown RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 CBX2Q14781 532 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 ACAP2Q15057 778 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 MARCH8Q5T0T0 291 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 IRAK1BP1Q5VVH5 260 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 NCBP2-AS2Q69YL0 99 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ADGRD1Q6QNK2 874 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 SPATA19Q7Z5L4 167 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 TAGAPQ8N103 731 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PSMG2Q969U7 264 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ERP27Q96DN0 273 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 NUSAP1Q9BXS6 441 aaKnown RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 FBXO10Q9UK96 956 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PCDHB9Q9Y5E1 797 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ENDOD1O94919 500 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 LBPP18428 481 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 C6orf10Q5SRN2 563 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PM20D1Q6GTS8 502 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 LRRC34Q8IZ02 419 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ICA1LQ8NDH6 482 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 DNAJB8Q8NHS0 232 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 KLHL5Q96PQ7 755 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 HGH1Q9BTY7 390 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PARVBQ9HBI1 364 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 GDE1Q9NZC3 331 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 RIMKLBQ9ULI2 386 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 KCNE2Q9Y6J6 123 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 FPGTO14772 594 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 SLC22A2O15244 555 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 FKBP6O75344 327 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ENO2P09104 434 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 NTSP30990 170 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 RANBP1P43487 201 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PKNOX1P55347 436 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PDK4Q16654 411 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 CAPN13Q6MZZ7 669 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 RBM23Q86U06 439 aaKnown RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 APLFQ8IW19 511 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 TMEM132CQ8N3T6 1108 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 MRPL48Q96GC5 212 aaKnown RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 RUBCNLQ9H714 662 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ANKDD1BA6NHY2 528 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 ZBTB6Q15916 424 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 PTPRNQ16849 979 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 BNC2Q6ZN30 1099 aaPredicted RBP13.68□□□□□ -0.22
LDLR-201ENST00000252444 CCDC28BQ9BUN5 200 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 COG4Q9H9E3 785 aa13.68□□□□□ -0.22
LDLR-201ENST00000252444 MGAT3Q09327 533 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 FBXO43Q4G163 708 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 NIPAL1Q6NVV3 410 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 GDPD4Q6W3E5 623 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 PPP1R13LQ8WUF5 828 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 BADQ92934 168 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 ELMO3Q96BJ8 720 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 ECSITQ9BQ95 431 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 MIEF1Q9NQG6 463 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 HS3ST4Q9Y661 456 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 PSMA4P25789 261 aaKnown RBP13.67□□□□□ -0.22
LDLR-201ENST00000252444 OXTRP30559 389 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 SP140Q13342 867 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 PRKD1Q15139 912 aaPredicted RBP13.67□□□□□ -0.22
LDLR-201ENST00000252444 ANXA8L1Q5VT79 327 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 OR2AP1Q8NGE2 309 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 CASD1Q96PB1 797 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 KLHL28Q9NXS3 571 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 TCRBV9S1A1TA0A576 114 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 FAM189BP81408 668 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 ATAD3BQ5T9A4 648 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 MBLAC2Q68D91 279 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 ALKAL1Q6UXT8 129 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 CPXM2Q8N436 756 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 KIAA1958Q8N8K9 716 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 TMEM120AQ9BXJ8 343 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 MUC13Q9H3R2 512 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 BCAS3Q9H6U6 928 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 SNX5Q9Y5X3 404 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 PCNAP12004 261 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 GNSP15586 552 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 GBE1Q04446 702 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 NR6A1Q15406 480 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 NDUFA9Q16795 377 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 MPP7Q5T2T1 576 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 TWNKQ96RR1 684 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 CCDC134Q9H6E4 229 aa13.67□□□□□ -0.22
LDLR-201ENST00000252444 LEFTY2O00292 366 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 HOXC13P31276 330 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 NKX3-2P78367 333 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 RNF19BQ6ZMZ0 732 aa13.66□□□□□ -0.22
LDLR-201ENST00000252444 GALNT13Q8IUC8 556 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms