RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 CD300AQ9UGN4 299 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 TRAF6Q9Y4K3 522 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SNRPB2P08579 225 aaKnown RBP12.82□□□□□ -0.36
LINC00540-203ENST00000631321 ACADVLP49748 655 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 CDKN2DP55273 166 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SH3BGRP55822 239 aaPredicted RBP12.82□□□□□ -0.36
LINC00540-203ENST00000631321 PDAP1Q13442 181 aaKnown RBP12.82□□□□□ -0.36
LINC00540-203ENST00000631321 LSAMPQ13449 338 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 PPP1R3AQ16821 1122 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 AGKQ53H12 422 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 GNASQ5JWF2 1037 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 MARC1Q5VT66 337 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 FAM45BPQ6NSW5 357 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 TMEM207Q6UWW9 146 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 CXCL17Q6UXB2 119 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SATL1Q86VE3 508 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 MON1AQ86VX9 555 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 RNF135Q8IUD6 432 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 FAM45AQ8TCE6 357 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SOCS4Q8WXH5 440 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 SLC25A23Q9BV35 468 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 VCX3AQ9NNX9 186 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 NUDT5Q9UKK9 219 aa12.82□□□□□ -0.36
LINC00540-203ENST00000631321 IGLV3-10A0A075B6K4 115 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 LOC285095A0A1B0GVY8 99 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 J3KR12 359 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 UBFD1O14562 309 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 TNFAIP8O95379 198 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 TFAP2AP05549 437 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ZNF26P17031 533 aaPredicted RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ARSDP51689 593 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 CDKL1Q00532 357 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 RHDQ02161 417 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ACVR1Q04771 509 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 SLC10A7Q0GE19 358 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ZNF678Q5SXM1 525 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 IL23RQ5VWK5 629 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 LARP4Q71RC2 724 aaKnown RBP eCLIP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ISCA2Q86U28 154 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 PCDH20Q8N6Y1 951 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 FAM156AQ8NDB6 213 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 RIN3Q8TB24 985 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ZFRQ96KR1 1074 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 UHRF1Q96T88 793 aaPredicted RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 MRPS26Q9BYN8 205 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ZYG11BQ9C0D3 744 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 UPF3AQ9H1J1 476 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 SPAG4Q9NPE6 437 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 TMEM181Q9P2C4 612 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 MRPL42Q9Y6G3 142 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 TRPM7Q96QT4 1865 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 TCRBV3S1A0A5B6 114 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ATXN1LP0C7T5 689 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 HAPLN1P10915 354 aaPredicted RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 KCNC1P48547 511 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 MYBPC1Q00872 1141 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 DSC2Q02487 901 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 YWHAHQ04917 246 aaPredicted RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 UGT3A2Q3SY77 523 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 MGAT5BQ3V5L5 792 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 MS4A13Q5J8X5 152 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 PAOXQ6QHF9 649 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 C17orf99Q6UX52 265 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 RPS27LQ71UM5 84 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 SPNS2Q8IVW8 549 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 ARRDC2Q8TBH0 407 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 PEX13Q92968 403 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 HDAC10Q969S8 669 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 DGCR14Q96DF8 476 aaKnown RBP12.81□□□□□ -0.36
LINC00540-203ENST00000631321 PHF21BQ96EK2 531 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 FIS1Q9Y3D6 152 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 AP4S1Q9Y587 144 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 TLL2Q9Y6L7 1015 aa12.81□□□□□ -0.36
LINC00540-203ENST00000631321 PCNTO95613 3336 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 PRORSD1PA6NEY8 169 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 LDB2O43679 373 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 GPC4O75487 556 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ARSAP15289 507 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 HOXB8P17481 243 aaPredicted RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 TCN1P20061 433 aaPredicted RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 FDXRP22570 491 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 SUOXP51687 545 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 PLK1P53350 603 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 TBX4P57082 545 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 MAXP61244 160 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 USP46P62068 366 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 NKX3-2P78367 333 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 UNC50Q53HI1 259 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 SIRPB2Q5JXA9 342 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 EP400NLQ6ZTU2 488 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 PTAR1Q7Z6K3 402 aaPredicted RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ZNF598Q86UK7 904 aaKnown RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 GPR150Q8NGU9 434 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ATP6V1E2Q96A05 226 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 C8orf48Q96LL4 319 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 KLHL5Q96PQ7 755 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ZCWPW1Q9H0M4 648 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 ALG9Q9H6U8 611 aa12.8□□□□□ -0.36
LINC00540-203ENST00000631321 MARCH4Q9P2E8 410 aaPredicted RBP12.8□□□□□ -0.36
LINC00540-203ENST00000631321 PADI4Q9UM07 663 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms