RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 TMEM145Q8NBT3 493 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 SAP25Q8TEE9 199 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 GDAP1L1Q96MZ0 367 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 MAK16Q9BXY0 300 aaKnown RBP12.78□□□□□ -0.36
PNKP-217ENST00000625216 ZDHHC6Q9H6R6 413 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 PCYOX1Q9UHG3 505 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 BTBD3Q9Y2F9 522 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 FADS3Q9Y5Q0 445 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 ACTL7AQ9Y615 435 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 HS3ST3A1Q9Y663 406 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 CABIN1Q9Y6J0 2220 aa12.78□□□□□ -0.36
PNKP-217ENST00000625216 RNF103O00237 685 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 SLC31A1O15431 190 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 DAPK3O43293 454 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 TMCC1O94876 653 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 DKK1O94907 266 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 HEXIM1O94992 359 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 MAP3K6O95382 1288 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 IGSF6O95976 241 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 CDK4P11802 303 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 EPHA8P29322 1005 aaPredicted RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 HCAR3P49019 387 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 TUBB4BP68371 445 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 DR1Q01658 176 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 GBE1Q04446 702 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 SLC10A2Q12908 348 aaPredicted RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 DHX34Q14147 1143 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 PAFAH1B3Q15102 231 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 SHBQ15464 509 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 TMEM259Q4ZIN3 620 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 GLE1Q53GS7 698 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 PRAMEF14Q5SWL7 426 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 GDPD4Q6W3E5 623 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 SLCO6A1Q86UG4 719 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 SPATS2Q86XZ4 545 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 JAMLQ86YT9 394 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 NPWQ8N729 165 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 KDF1Q8NAX2 398 aaPredicted RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 TTC13Q8NBP0 860 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 HCAR2Q8TDS4 363 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 ASB12Q8WXK4 309 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 GATA6Q92908 595 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 SLCO2A1Q92959 643 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 HMCESQ96FZ2 354 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 LENG8Q96PV6 779 aaPredicted RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 TMEM121BQ9BXQ6 578 aaPredicted RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 SLC17A9Q9BYT1 436 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 CPEB1Q9BZB8 566 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 C10orf88Q9H8K7 445 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 HOMER3Q9NSC5 361 aa12.77□□□□□ -0.37
PNKP-217ENST00000625216 ZFR2Q9UPR6 939 aaKnown RBP12.77□□□□□ -0.37
PNKP-217ENST00000625216 FAM187AA6NFU0 413 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 ARHGAP42A6NI28 874 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 C1QTNF9BB2RNN3 333 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 ATXN1LP0C7T5 689 aaKnown RBP12.76□□□□□ -0.37
PNKP-217ENST00000625216 C1QTNF9P0C862 333 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 THEGLP0DJG4 465 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 ZFXP17010 805 aaPredicted RBP12.76□□□□□ -0.37
PNKP-217ENST00000625216 SUOXP51687 545 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 EIF3EP60228 445 aaKnown RBP12.76□□□□□ -0.37
PNKP-217ENST00000625216 RHOAP61586 193 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 IL9RQ01113 521 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 SGCGQ13326 291 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 GRM3Q14832 879 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 B4GALNT4Q76KP1 1039 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 PARS2Q7L3T8 475 aaKnown RBP12.76□□□□□ -0.37
PNKP-217ENST00000625216 ABI3BPQ7Z7G0 1075 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 TP53INP2Q8IXH6 220 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 LZTR1Q8N653 840 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 PNPLA1Q8N8W4 532 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 NETO2Q8NC67 525 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 IFT43Q96FT9 208 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 RUNDC3BQ96NL0 473 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 C1QTNF2Q9BXJ5 285 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 FRMD8P1Q9BZ68 369 aaPredicted RBP12.76□□□□□ -0.37
PNKP-217ENST00000625216 TOR4AQ9NXH8 423 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 DTLQ9NZJ0 730 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 DKK3Q9UBP4 350 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 UBA2Q9UBT2 640 aaPredicted RBP12.76□□□□□ -0.37
PNKP-217ENST00000625216 FTSJ1Q9UET6 329 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 KLK13Q9UKR3 277 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 PCDHGA1Q9Y5H4 931 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 HEY1Q9Y5J3 304 aa12.76□□□□□ -0.37
PNKP-217ENST00000625216 ESYT3A0FGR9 886 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 NEMP1O14524 444 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 PRAMEF11O60813 436 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 ECEL1O95672 775 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 LDOC1O95751 146 aaPredicted RBP12.75□□□□□ -0.37
PNKP-217ENST00000625216 PAK4O96013 591 aaPredicted RBP12.75□□□□□ -0.37
PNKP-217ENST00000625216 UGT2B4P06133 528 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 C1SP09871 688 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 RBP3P10745 1247 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 GKP32189 559 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 VSNL1P62760 191 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 GUCY2DQ02846 1103 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 CYTH1Q15438 398 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 SEL1L3Q68CR1 1132 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 CCDC70Q6NSX1 233 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 LEKR1Q6ZMV7 388 aa12.75□□□□□ -0.37
PNKP-217ENST00000625216 TMPRSS7Q7RTY8 843 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms