RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 PRAMEF19Q5SWL8 479 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 CCSAPQ6IQ19 270 aaPredicted RBP5.32□□□□□ -1.56
VPS29-212ENST00000621131 ATG9AQ7Z3C6 839 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 SVIPQ8NHG7 77 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 ANP32EQ9BTT0 268 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 BRD8Q9H0E9 1235 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 PABPC3Q9H361 631 aaKnown RBP5.32□□□□□ -1.56
VPS29-212ENST00000621131 HMG20BQ9P0W2 317 aa5.32□□□□□ -1.56
VPS29-212ENST00000621131 PLEKHB1Q9UF11 243 aaPredicted RBP5.32□□□□□ -1.56
VPS29-212ENST00000621131 SRP68Q9UHB9 627 aaKnown RBP5.32□□□□□ -1.56
VPS29-212ENST00000621131 RIC1Q4ADV7 1423 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 CCDC171Q6TFL3 1326 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 UBR3Q6ZT12 1888 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 GNLYP22749 145 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 PDIA3P30101 505 aaKnown RBP5.31□□□□□ -1.56
VPS29-212ENST00000621131 SERPINF1P36955 418 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 AVPR1AP37288 418 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 PPP3CCP48454 512 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 PDLIM4P50479 330 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 AP2B1P63010 937 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 HYAL1Q12794 435 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 ALKBH1Q13686 389 aaKnown RBP5.31□□□□□ -1.56
VPS29-212ENST00000621131 KRT32Q14532 448 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 SHBQ15464 509 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 MAP9Q49MG5 647 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 MCMDC2Q4G0Z9 681 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 CAVIN4Q5BKX8 364 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 FSCBQ5H9T9 825 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 TBC1D9BQ66K14 1250 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 PGBD2Q6P3X8 592 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 RAB11FIP2Q7L804 512 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 RNF144BQ7Z419 303 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 CLIP4Q8N3C7 705 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 CNBD1Q8NA66 436 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 KBTBD3Q8NAB2 608 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 ARRDC3Q96B67 414 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 ZNF333Q96JL9 665 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 PUS3Q9BZE2 481 aaKnown RBP5.31□□□□□ -1.56
VPS29-212ENST00000621131 TM6SF1Q9BZW5 370 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 TRIM31Q9BZY9 425 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 WDR12Q9GZL7 423 aaKnown RBP5.31□□□□□ -1.56
VPS29-212ENST00000621131 ANKRD2Q9GZV1 360 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 CDT1Q9H211 546 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 RMI1Q9H9A7 625 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 SEPSECSQ9HD40 501 aaKnown RBP5.31□□□□□ -1.56
VPS29-212ENST00000621131 CHMP5Q9NZZ3 219 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 SLC25A13Q9UJS0 675 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 C19orf53Q9UNZ5 99 aaPredicted RBP5.31□□□□□ -1.56
VPS29-212ENST00000621131 RAP2CQ9Y3L5 183 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 MYH7P12883 1935 aa5.31□□□□□ -1.56
VPS29-212ENST00000621131 SCN5AQ14524 2016 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 SYT5O00445 386 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 RNF113AO15541 343 aaKnown RBP5.3□□□□□ -1.56
VPS29-212ENST00000621131 LIASO43766 372 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 TMCC1O94876 653 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 PPP1R3DO95685 299 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 FCGR2AP12318 317 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 PRKCHP24723 683 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 GSTM2P28161 218 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 HSPA4P34932 840 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 TMPRSS3P57727 454 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 TIMM10P62072 90 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 HNF4GQ14541 408 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 ANKRD1Q15327 319 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 TDRD12Q587J7 1177 aaKnown RBP5.3□□□□□ -1.56
VPS29-212ENST00000621131 SLC10A5Q5PT55 438 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 PRSS57Q6UWY2 283 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 VPS52Q8N1B4 723 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 HORMAD2Q8N7B1 307 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 C2CD4CQ8TF44 421 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 HDAC7Q8WUI4 952 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 RBM17Q96I25 401 aaKnown RBP5.3□□□□□ -1.56
VPS29-212ENST00000621131 APOLD1Q96LR9 279 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 PIGSQ96S52 555 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 XRN2Q9H0D6 950 aaKnown RBP eCLIP5.3□□□□□ -1.56
VPS29-212ENST00000621131 TMX4Q9H1E5 349 aaPredicted RBP5.3□□□□□ -1.56
VPS29-212ENST00000621131 C6orf106Q9H6K1 298 aaPredicted RBP5.3□□□□□ -1.56
VPS29-212ENST00000621131 ELAC1Q9H777 363 aaKnown RBP5.3□□□□□ -1.56
VPS29-212ENST00000621131 CTNNA3Q9UI47 895 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 RIPOR2Q9Y4F9 1068 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 CYP46A1Q9Y6A2 500 aa5.3□□□□□ -1.56
VPS29-212ENST00000621131 MED23Q9ULK4 1368 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 DUOX1Q9NRD9 1551 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 A0A1B0GUL6 1792 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 SAC3D1A6NKF1 404 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 VWA5AO00534 786 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 HSPB6O14558 160 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 LDB2O43679 373 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 FRAT2O75474 233 aaPredicted RBP5.29□□□□□ -1.56
VPS29-212ENST00000621131 PRSS2P07478 247 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 HMGB1P09429 215 aaKnown RBP5.29□□□□□ -1.56
VPS29-212ENST00000621131 MYZAPP0CAP1 466 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 LYL1P12980 280 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 MT3P25713 68 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 NUCB2P80303 420 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 CHRNDQ07001 517 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 UBE4AQ14139 1066 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 RPS6KA2Q15349 733 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 HEPHL1Q6MZM0 1159 aa5.29□□□□□ -1.56
VPS29-212ENST00000621131 TMED8Q6PL24 325 aaPredicted RBP5.29□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms