RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZFATQ9P243 1243 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 GGT7Q9UJ14 662 aa14.33□□□□□ -0.11
USP39-220ENST00000613444 RPL26L1Q9UNX3 145 aaKnown RBP14.33□□□□□ -0.11
USP39-220ENST00000613444 ZNF106Q9H2Y7 1883 aaKnown RBP14.33□□□□□ -0.12
USP39-220ENST00000613444 ATG2BQ96BY7 2078 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 A0A1W2PPM1 405 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 BNIP3LO60238 219 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 SERPINA4P29622 427 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 ATP5DP30049 168 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 NNMTP40261 264 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 ZNF140P52738 457 aaPredicted RBP14.33□□□□□ -0.12
USP39-220ENST00000613444 PRPF38BQ5VTL8 546 aaKnown RBP14.33□□□□□ -0.12
USP39-220ENST00000613444 PACS1Q6VY07 963 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 TTC30BQ8N4P2 665 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 KDM1BQ8NB78 822 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 SUV39H2Q9H5I1 410 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 ACTL7BQ9Y614 415 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 IKBKGQ9Y6K9 419 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 WASF2Q9Y6W5 498 aa14.33□□□□□ -0.12
USP39-220ENST00000613444 A0A0J9YYE9 177 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 BUD23O43709 281 aaKnown RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 KAT7O95251 611 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 TRBC1P01850 177 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 F7P08709 466 aaPredicted RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 HPDP32754 393 aaPredicted RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 SOX9P48436 509 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 CBX1P83916 185 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 LAMB3Q13751 1172 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 TAF1AQ15573 450 aaPredicted RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 KDM7AQ6ZMT4 941 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 SH2D5Q6ZV89 423 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 ZNF366Q8N895 744 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 OR13C4Q8NGS5 318 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 EID2BQ96D98 161 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 DNAJC1Q96KC8 554 aaKnown RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 ZNF641Q96N77 438 aaPredicted RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 GUCD1Q96NT3 240 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 TMEM245Q9H330 911 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 ZDHHC6Q9H6R6 413 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 BRD9Q9H8M2 597 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 IARS2Q9NSE4 1012 aaKnown RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 PPIL1Q9Y3C6 166 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 CKAP5Q14008 2032 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 A0A0U1RQS6 177 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 CCL22O00626 93 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 CTSLP07711 333 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 ALPIP09923 528 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 PAMP19021 973 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 ABL2P42684 1182 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 PPP2R2AP63151 447 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 CDKN3Q16667 212 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 GLT6D1Q7Z4J2 308 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 SRRM1Q8IYB3 904 aaKnown RBP14.32□□□□□ -0.12
USP39-220ENST00000613444 STYXQ8WUJ0 223 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 CPNE1Q99829 537 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 MAGEE1Q9HCI5 957 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 PLA2G4CQ9UP65 541 aa14.32□□□□□ -0.12
USP39-220ENST00000613444 IQANK1A0A1B0GTG1 560 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 TBC1D3BA6NDS4 549 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 SLC7A4O43246 635 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 CRTAMO95727 393 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 UGT2B4P06133 528 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 CTPS1P17812 591 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 KRT15P19012 456 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 GABRB3P28472 473 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 GP5P40197 560 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 GRIA2P42262 883 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 ZNF234Q14588 700 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 GRM3Q14832 879 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 HDAC10Q969S8 669 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 TBATAQ96M53 351 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 HEPHQ9BQS7 1158 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 NLE1Q9NVX2 485 aaPredicted RBP14.31□□□□□ -0.12
USP39-220ENST00000613444 HACD3Q9P035 362 aa14.31□□□□□ -0.12
USP39-220ENST00000613444 SNRPAP09012 282 aaKnown RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 SERPINB9P50453 376 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 EPHB1P54762 984 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 ST8SIA6P61647 398 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 RAD51Q06609 339 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 BMPR2Q13873 1038 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 HNRNPA1L2Q32P51 320 aaKnown RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 GDPD4Q6W3E5 623 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 DENND6AQ8IWF6 608 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 GRIN3AQ8TCU5 1115 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 EZH1Q92800 747 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 SERAC1Q96JX3 654 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 LYSMD1Q96S90 227 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 MFSD1Q9H3U5 465 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 TRABDQ9H4I3 376 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 SUDS3Q9H7L9 328 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 KCNK12Q9HB15 430 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 THAP10Q9P2Z0 257 aaPredicted RBP14.3□□□□□ -0.12
USP39-220ENST00000613444 ADAM21Q9UKJ8 722 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 SLC8A2Q9UPR5 921 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 ZNF711Q9Y462 761 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 CAPN8A6NHC0 703 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 TRIM49D1C9J1S8 452 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 LEFTY1O75610 366 aa14.3□□□□□ -0.12
USP39-220ENST00000613444 RPP40O75818 363 aaKnown RBP14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms