RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ZKSCAN5Q9Y2L8 839 aa16.63■□□□□ 0.25
CCDC28A-202ENST00000611852 CFAP69A5D8W1 941 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 C5orf60A6NFR6 353 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 PRAMEF26H0Y7S4 382 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 NFKBIAP25963 317 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 LIG3P49916 1009 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 GDF10P55107 478 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 RPL26P61254 145 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 CCNG2Q16589 344 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 ITPRIPL1Q6GPH6 555 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 TMEM145Q8NBT3 493 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 CCDC110Q8TBZ0 833 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 ASB12Q8WXK4 309 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 OXNAD1Q96HP4 312 aaPredicted RBP16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 MS4A14Q96JA4 679 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 TRIB3Q96RU7 358 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 NUSAP1Q9BXS6 441 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 GBA3Q9H227 469 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 FZD3Q9NPG1 666 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 FAM153AQ9UHL3 310 aa16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 TTC7AQ9ULT0 858 aaPredicted RBP16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 RPL26L1Q9UNX3 145 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.62■□□□□ 0.25
CCDC28A-202ENST00000611852 LRRK1Q38SD2 2015 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 A0A0J9YYE9 177 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 LNP1A1A4G5 178 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 NPIPB15A6NHN6 443 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 A8MX80 341 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 ESPNB1AK53 854 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 F5H423 210 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 FOXD2O60548 495 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 OPHN1O60890 802 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 PMPCBO75439 489 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 TM7SF2O76062 418 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 TRBC1P01850 177 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 ALPIP09923 528 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 C6P13671 934 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 CTPS1P17812 591 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 HNRNPA2B1P22626 353 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 GRIA4P48058 902 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 CSNK1EP49674 416 aaKnown RBP16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 EPHB1P54762 984 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 SGCGQ13326 291 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 SNX1Q13596 522 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 PTPRRQ15256 657 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 PCSK7Q16549 785 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 KDELC1Q6UW63 502 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 LIPIQ6XZB0 460 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 USP45Q70EL2 814 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 KDELC2Q7Z4H8 507 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 NDUFAF2Q8N183 169 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 C12orf50Q8NA57 414 aaPredicted RBP16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 LPCAT1Q8NF37 534 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 COG1Q8WTW3 980 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 SMIM14Q96QK8 99 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 MYOCQ99972 504 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 GORASP1Q9BQQ3 440 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 ADGRE3Q9BY15 652 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 FSCN3Q9NQT6 498 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 AASDHPPTQ9NRN7 309 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 CA5BQ9Y2D0 317 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 PCDH15Q96QU1 1955 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 KNL1Q8NG31 2342 aa16.61■□□□□ 0.25
CCDC28A-202ENST00000611852 A0A1W2PR77 199 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 ANKRD66B4E2M5 251 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CES2O00748 559 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 RAD51BO15315 384 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 GCATO75600 419 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 WNT1P04628 370 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CYP2A6P11509 494 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 LHCGRP22888 699 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CD38P28907 300 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 AKT2P31751 481 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 STIP1P31948 543 aaKnown RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 VIPR1P32241 457 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 HNF1BP35680 557 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CDK18Q07002 472 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 DRICH1Q6PGQ1 229 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 LAYNQ6UX15 382 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 KIAA2013Q8IYS2 634 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 RTP4Q96DX8 246 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 LENG8Q96PV6 779 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 KLF6Q99612 283 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 RXFP3Q9NSD7 469 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 ZNF148Q9UQR1 794 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 COQ6Q9Y2Z9 468 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 LAMA1P25391 3075 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 A0A1B0GVT2 93 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 CAPN8A6NHC0 703 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 VILLO15195 856 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 FANCGO15287 622 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 HEXIM1O94992 359 aaKnown RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 ITGAVP06756 1048 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 ELFN1P0C7U0 828 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 PSMB4P28070 264 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 HOXD11P31277 338 aaPredicted RBP16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 WNT3AP56704 352 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 MPP3Q13368 585 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 GALNT3Q14435 633 aa16.6■□□□□ 0.25
CCDC28A-202ENST00000611852 STAT4Q14765 748 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms