RNA–Protein interactions for RNA: ENST00000610828.4

NEK3-205, Transcript of NIMA related kinase 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK3, Length 2,396 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-205ENST00000610828 A0A1B0GVM2 712 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ILVBLA1L0T0 632 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 TCAF2A6NFQ2 919 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 SCAMP3O14828 347 aaKnown RBP13.67□□□□□ -0.22
NEK3-205ENST00000610828 CD3EAPO15446 510 aaKnown RBP13.67□□□□□ -0.22
NEK3-205ENST00000610828 ZBTB14O43829 449 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 KRT34O76011 436 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 TM7SF2O76062 418 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 NDST3O95803 873 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 SLC4A1P02730 911 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ATP5F1P24539 256 aaPredicted RBP13.67□□□□□ -0.22
NEK3-205ENST00000610828 EPHA3P29320 983 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 RAP1GDS1P52306 607 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 CDKN2DP55273 166 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 SLC25A3Q00325 362 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 LAMB3Q13751 1172 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 BTG3Q14201 252 aaPredicted RBP13.67□□□□□ -0.22
NEK3-205ENST00000610828 VEPH1Q14D04 833 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 TECRLQ5HYJ1 363 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ULK2Q8IYT8 1036 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ANKRD49Q8WVL7 239 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 CMTM5Q96DZ9 223 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 OSBPL1AQ9BXW6 950 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 CYP4F12Q9HCS2 524 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 CCDC162PA2VCL2 907 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 RPP40O75818 363 aaKnown RBP13.67□□□□□ -0.22
NEK3-205ENST00000610828 RPSAP08865 295 aaKnown RBP13.67□□□□□ -0.22
NEK3-205ENST00000610828 CPOXP36551 454 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 DSG1Q02413 1049 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ACVR1Q04771 509 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 TWF1Q12792 350 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 METTL21CQ5VZV1 264 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 MRNIPQ6NTE8 343 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 TRIM67Q6ZTA4 783 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 PIM3Q86V86 326 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 AUTS2Q8WXX7 1259 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 PEX13Q92968 403 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 STMN2Q93045 179 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 UBXN10Q96LJ8 280 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 NSMCE3Q96MG7 304 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ZNF558Q96NG5 402 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 TRIB3Q96RU7 358 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 ATP11BQ9Y2G3 1177 aa13.67□□□□□ -0.22
NEK3-205ENST00000610828 INSIG1O15503 277 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 GNAZP19086 355 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 ELF1P32519 619 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 HK2P52789 917 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 PLK1P53350 603 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 SLC14A2Q15849 920 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 PDCD2Q16342 344 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 GPR158Q5T848 1215 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 RNF219Q5W0B1 726 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 CHST9Q7L1S5 443 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 PIWIL4Q7Z3Z4 852 aaKnown RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 SETD3Q86TU7 594 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 TTC16Q8NEE8 873 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 OR4L1Q8NH43 312 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 PDCD6IPQ8WUM4 868 aaKnown RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 CYP2S1Q96SQ9 504 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 TRPC7Q9HCX4 862 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 SCUBE2Q9NQ36 999 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 CATSPERZQ9NTU4 200 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 HSFX1Q9UBD0 423 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 VTI1BQ9UEU0 232 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 MTF2Q9Y483 593 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 GRID2O43424 1007 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 NPHS1O60500 1241 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 CIB2O75838 187 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 KRT36O76013 467 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 C1RP00736 705 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 RBP1P09455 135 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 MBL2P11226 248 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 HNRNPLP14866 589 aaKnown RBP eCLIP13.66□□□□□ -0.222e-21■■□□□ 11.7
NEK3-205ENST00000610828 KCNA5P22460 613 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 SESN3P58005 492 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 PEX6Q13608 980 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 RFTN1Q14699 578 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 ACAP2Q15057 778 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 RCN1Q15293 331 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 LSM12Q3MHD2 195 aaKnown RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 SH2D4BQ5SQS7 431 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 FAM45BPQ6NSW5 357 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 ACAD11Q709F0 780 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 DNAJB7Q7Z6W7 309 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 SLC39A11Q8N1S5 342 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 FAM45AQ8TCE6 357 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 TOP1MTQ969P6 601 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 PHF21BQ96EK2 531 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 TRMT2BQ96GJ1 504 aaKnown RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 TOX2Q96NM4 488 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 KLF16Q9BXK1 252 aaPredicted RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 TMEM39AQ9NV64 488 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 SAGE1Q9NXZ1 904 aa13.66□□□□□ -0.22
NEK3-205ENST00000610828 G3BP2Q9UN86 482 aaKnown RBP13.66□□□□□ -0.22
NEK3-205ENST00000610828 LAMA3Q16787 3333 aa13.65□□□□□ -0.22
NEK3-205ENST00000610828 A8MT66 165 aa13.65□□□□□ -0.22
NEK3-205ENST00000610828 TMEM233B4DJY2 109 aa13.65□□□□□ -0.22
NEK3-205ENST00000610828 SLCO1B7G3V0H7 640 aa13.65□□□□□ -0.22
NEK3-205ENST00000610828 IPO13O94829 963 aaKnown RBP13.65□□□□□ -0.22
NEK3-205ENST00000610828 CRTAMO95727 393 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms