RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SLC46A1Q96NT5 459 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 GFM1Q96RP9 751 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 FOXP3Q9BZS1 431 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 HAUS4Q9H6D7 363 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 MRPL40Q9NQ50 206 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 CNOT8Q9UFF9 292 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 RABGEF1Q9UJ41 708 aa17.69■□□□□ 0.42
SHKBP1-223ENST00000600552 TSPAN11A1L157 253 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 CACNB4O00305 520 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 TCEA3O75764 348 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 C1QL1O75973 258 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 DXOO77932 396 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 RECQL5O94762 991 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 RPLP0P05388 317 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 ELFN1P0C7U0 828 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 SKILP12757 684 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 HTR7P34969 479 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 ZSCAN23Q3MJ62 389 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 FILIP1LQ4L180 1135 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 PLEKHA7Q6IQ23 1121 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 ARHGAP12Q8IWW6 846 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 ARL14Q8N4G2 192 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 NPWQ8N729 165 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 PDXPQ96GD0 296 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 TBATAQ96M53 351 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 TUBGCP5Q96RT8 1024 aa17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 NAT10Q9H0A0 1025 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-223ENST00000600552 GCN1Q92616 2671 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 CCDC187A0A096LP49 1063 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 TMEM202A6NGA9 273 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 TMEM191CA6NGB0 347 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 UCNP55089 124 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 MTM1Q13496 603 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 PPP1R2P3Q6NXS1 205 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 ZNF571Q7Z3V5 609 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 B3GNT8Q7Z7M8 397 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 SFTPA2Q8IWL1 248 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 FAM46DQ8NEK8 389 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 OR1E3Q8WZA6 343 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 HSPH1Q92598 858 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 ZWILCHQ9H900 591 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 CYP4F12Q9HCS2 524 aa17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 RTN4Q9NQC3 1192 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 CWC15Q9P013 229 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-223ENST00000600552 UNC13CQ8NB66 2214 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 GOLGA6CA6NDK9 693 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 GOLGA6BA6NDN3 693 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 B4DGG1 531 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 TK2O00142 265 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 GOLGA6DP0CG33 693 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 HGFP14210 728 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 AMPD1P23109 780 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 CSNK1DP48730 415 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 POLR2LP62875 67 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 IL10RBQ08334 325 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 KLHL30Q0D2K2 578 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 RALGDSQ12967 914 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 ZNF235Q14590 738 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 LBRQ14739 615 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 SMTNL2Q2TAL5 461 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 LVRNQ6Q4G3 990 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 LIPIQ6XZB0 460 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 FBXO39Q8N4B4 442 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 WDR48Q8TAF3 677 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 FUBP1Q96AE4 644 aaKnown RBP17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 GRAMD1AQ96CP6 724 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 PRR11Q96HE9 360 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 SYT11Q9BT88 431 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 DPH1Q9BZG8 443 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 GOLGA6AQ9NYA3 693 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 ATXN7L1Q9ULK2 861 aaPredicted RBP17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 PCDHGC4Q9Y5F7 938 aa17.66■□□□□ 0.42
SHKBP1-223ENST00000600552 COL27A1Q8IZC6 1860 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 DDX3XO00571 662 aaKnown RBP eCLIP17.65■□□□□ 0.423e-6■■■□□ 15.7
SHKBP1-223ENST00000600552 MBD3O95983 291 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 PDX1P52945 283 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 CFHR1Q03591 330 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 VAC14Q08AM6 782 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 SLC10A7Q0GE19 358 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 KIAA1614Q5VZ46 1190 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 E4F1Q66K89 784 aaPredicted RBP17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 DPPA4Q7L190 304 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 ZNF605Q86T29 641 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 OR56A4Q8NGH8 313 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 NSMCE3Q96MG7 304 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 LGR4Q9BXB1 951 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 STRADBQ9C0K7 418 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 TMEM168Q9H0V1 697 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 LRRN3Q9H3W5 708 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 DPEP2Q9H4A9 486 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 FGF22Q9HCT0 170 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 SEPT3Q9UH03 358 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 MYO6Q9UM54 1294 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 PCDHGA8Q9Y5G5 932 aa17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 SMG1Q96Q15 3661 aaKnown RBP17.65■□□□□ 0.42
SHKBP1-223ENST00000600552 A0A1W2PQM1 296 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 SMTNL1A8MU46 457 aa17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 EIF3CLB5ME19 914 aaKnown RBP17.64■□□□□ 0.41
SHKBP1-223ENST00000600552 H3BRJ5 948 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms