RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CXorf40AQ8TE69 158 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 ASB12Q8WXK4 309 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 PIGKQ92643 395 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 IFT43Q96FT9 208 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 CAPZA3Q96KX2 299 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 MRGPRX2Q96LB1 330 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 MLPHQ9BV36 600 aaPredicted RBP19.43■□□□□ 0.7
UPF1-209ENST00000600310 C1QTNF2Q9BXJ5 285 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 TMEM74BQ9NUR3 256 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 DMTF1Q9Y222 760 aa19.43■□□□□ 0.7
UPF1-209ENST00000600310 IGLON5A6NGN9 336 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 ANKRD66B4E2M5 251 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 MMP20O60882 483 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 PHF2O75151 1096 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 CTPS1P17812 591 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 VIPR1P32241 457 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 ACTN2P35609 894 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 COILP38432 576 aaPredicted RBP19.42■□□□□ 0.7
UPF1-209ENST00000600310 PAFAH1B1P43034 410 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 SEMG2Q02383 582 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 LMNB2Q03252 620 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 FGL2Q14314 439 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 SETMARQ53H47 684 aaPredicted RBP19.42■□□□□ 0.7
UPF1-209ENST00000600310 TTC27Q6P3X3 843 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 KDELC2Q7Z4H8 507 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 GLIS1Q8NBF1 620 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 IPMKQ8NFU5 416 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 LYSMD1Q96S90 227 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 WRAP53Q9BUR4 548 aaKnown RBP19.42■□□□□ 0.7
UPF1-209ENST00000600310 ARRDC1-AS1Q9H2J1 176 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 PAK5Q9P286 719 aa19.42■□□□□ 0.7
UPF1-209ENST00000600310 MYO15AQ9UKN7 3530 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 CAPN8A6NHC0 703 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 NPIPB15A6NHN6 443 aaPredicted RBP19.41■□□□□ 0.7
UPF1-209ENST00000600310 SLC31A1O15431 190 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 TM7SF2O76062 418 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 HEXIM1O94992 359 aaKnown RBP19.41■□□□□ 0.7
UPF1-209ENST00000600310 ALPIP09923 528 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 ETS1P14921 441 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 HNF1BP35680 557 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 MPLP40238 635 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 FNTAP49354 379 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 LIG3P49916 1009 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 GALNT3Q14435 633 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 CCDC70Q6NSX1 233 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 LIPIQ6XZB0 460 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 ASCL5Q7RTU5 278 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 GSTA5Q7RTV2 222 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 PRUNE1Q86TP1 453 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 RUBCNQ92622 972 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 KLK6Q92876 244 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 RMDN1Q96DB5 314 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 SMIM14Q96QK8 99 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 SLC17A9Q9BYT1 436 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 MIR1-1HGQ9H1L0 117 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 NCDNQ9UBB6 729 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 SUSD2Q9UGT4 822 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 SPAG17Q6Q759 2223 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 ANKRD36A6QL64 1941 aa19.41■□□□□ 0.7
UPF1-209ENST00000600310 ZFHX2Q9C0A1 2572 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 SDK1Q7Z5N4 2213 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 CFAP54Q96N23 3096 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 GOLGA6CA6NDK9 693 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 GOLGA6BA6NDN3 693 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 A8MX80 341 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 KIF2AO00139 706 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 PDE2AO00408 941 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 GFRA3O60609 400 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 PAK4O96013 591 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 ATXN1LP0C7T5 689 aaKnown RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 ZSCAN5DPP0CG00 497 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 GOLGA6DP0CG33 693 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 C6P13671 934 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 GNSP15586 552 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 LHCGRP22888 699 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 RPL22P35268 128 aaKnown RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 ADRA1AP35348 466 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 FDFT1P37268 417 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 TNNT3P45378 269 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 SGCGQ13326 291 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 PTPRRQ15256 657 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 CNGA3Q16281 694 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 PLA2G2CQ5R387 149 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 KCTD11Q693B1 232 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 CCDC137Q6PK04 289 aaKnown RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 C4orf22Q6V702 233 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 CBARPQ8N350 705 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 FSD1LQ9BXM9 530 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 GOLGA6AQ9NYA3 693 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 FEZ2Q9UHY8 353 aaPredicted RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 SLCO1B1Q9Y6L6 691 aa19.4■□□□□ 0.7
UPF1-209ENST00000600310 ATXN2Q99700 1313 aaKnown RBP19.4■□□□□ 0.7
UPF1-209ENST00000600310 GPR179Q6PRD1 2367 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 A0A1B0GTW7 788 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 PRAMEF26H0Y7S4 382 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 PSMD11O00231 422 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 BCAT2O15382 392 aaPredicted RBP19.39■□□□□ 0.69
UPF1-209ENST00000600310 PSMD3O43242 534 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 ELFN1P0C7U0 828 aa19.39■□□□□ 0.69
UPF1-209ENST00000600310 HLA-DPA1P20036 260 aa19.39■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms