RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CAMK1Q14012 370 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 TAB1Q15750 504 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 FAR1Q8WVX9 515 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 ZNF514Q96K75 400 aaPredicted RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 SMAD5Q99717 465 aaKnown RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 SPATA9Q9BWV2 254 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 HES2Q9Y543 173 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 GLYATL1P3A0A0U1RQE8 302 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 B4GALT4O60513 344 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 MED26O95402 600 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 HSD17B2P37059 387 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 ATP12AP54707 1039 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 PFKFB4Q16877 469 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 WDR45BQ5MNZ6 344 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 GPR180Q86V85 440 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 KIAA0895Q8NCT3 520 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 EEF1AKMT1Q8WVE0 214 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 CERS2Q96G23 380 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 MYOCQ99972 504 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 AGXT2Q9BYV1 514 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 HMG20AQ9NP66 347 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 Q9Y3F1 56 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 UGT2B15P54855 530 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 SLC25A52Q3SY17 297 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 POM121L1PQ3SYA9 428 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 PTF1AQ7RTS3 328 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 TMPRSS6Q8IU80 811 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 MAGEH1Q9H213 219 aa20.53■□□□□ 0.88
UPF1-207ENST00000599848 SEMA4BQ9NPR2 832 aaPredicted RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 ZMYND8Q9ULU4 1186 aaPredicted RBP20.53■□□□□ 0.88
UPF1-207ENST00000599848 ASMTP46597 345 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 RCN1Q15293 331 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 NAT16Q8N8M0 369 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 GMEB2Q9UKD1 530 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 CAPN14A8MX76 684 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ENTPD5O75356 428 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 BRCC3P46736 316 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 RHAGQ02094 409 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 PUS10Q3MIT2 529 aaKnown RBP20.52■□□□□ 0.88
UPF1-207ENST00000599848 TMEM154Q6P9G4 183 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ZFPM1Q8IX07 1006 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 KAT5Q92993 513 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 MCRS1Q96EZ8 462 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 TRMOQ9BU70 441 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ALG9Q9H6U8 611 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ME2P23368 584 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 STXBP1P61764 594 aaKnown RBP20.52■□□□□ 0.88
UPF1-207ENST00000599848 SQLEQ14534 574 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 LRRC34Q8IZ02 419 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 UNC5BQ8IZJ1 945 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ADAMTS15Q8TE58 950 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 C1RP00736 705 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ICAM3P32942 547 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 MAPKAPK3Q16644 382 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ZNF697Q5TEC3 545 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 ZSCAN1Q8NBB4 408 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 SLC22A18Q96BI1 424 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 MAML3Q96JK9 1138 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 FNDC11Q9BVV2 318 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 KLHL4Q9C0H6 718 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 LHX5Q9H2C1 402 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 TMBIM4Q9HC24 238 aa20.52■□□□□ 0.88
UPF1-207ENST00000599848 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP20.52■□□□□ 0.88
UPF1-207ENST00000599848 NT5C1B-RDH14C9J2C7 533 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 PRMT5O14744 637 aaPredicted RBP20.51■□□□□ 0.87
UPF1-207ENST00000599848 MC4RP32245 332 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 PDZK1Q5T2W1 519 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FOXR2Q6PJQ5 311 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 PRR23BQ6ZRT6 265 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 OAFQ86UD1 273 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 ITCHQ96J02 903 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 KLHL31Q9H511 634 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 DZANK1Q9NVP4 752 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CCDC166P0CW27 439 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 PECAM1P16284 738 aaPredicted RBP20.51■□□□□ 0.87
UPF1-207ENST00000599848 ARF4P18085 180 aaPredicted RBP20.51■□□□□ 0.87
UPF1-207ENST00000599848 ARRB1P49407 418 aaPredicted RBP20.51■□□□□ 0.87
UPF1-207ENST00000599848 BMT2Q1RMZ1 405 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 TREML2Q5T2D2 321 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 C12orf56Q8IXR9 622 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 DDHD1Q8NEL9 900 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 ARHGAP9Q9BRR9 750 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 MCCC2Q9HCC0 563 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 DNAAF2Q9NVR5 837 aaKnown RBP20.51■□□□□ 0.87
UPF1-207ENST00000599848 IL6P05231 212 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 C8AP07357 584 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CD44P16070 742 aaKnown RBP20.51■□□□□ 0.87
UPF1-207ENST00000599848 PTPN4P29074 926 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FAM92BQ6ZTR7 304 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FUBP3Q96I24 572 aaKnown RBP eCLIP20.51■□□□□ 0.87
UPF1-207ENST00000599848 TMEM175Q9BSA9 504 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CDH19Q9H159 772 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CALML5Q9NZT1 146 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 KIF1AQ12756 1690 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 DLGAP3O95886 979 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 PRKCIP41743 596 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 FSTL1Q12841 308 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 TMEM27Q9HBJ8 222 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 CFIP05156 583 aa20.51■□□□□ 0.87
UPF1-207ENST00000599848 ATP5A1P25705 553 aaKnown RBP20.51■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms