RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 SIRPGQ9P1W8 387 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 GULP1Q9UBP9 304 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 PNMA8BQ9ULN7 279 aaPredicted RBP9.86□□□□□ -0.83
VRK3-216ENST00000599342 PADI4Q9UM07 663 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 SATB2Q9UPW6 733 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 CACNA1GO43497 2377 aa9.86□□□□□ -0.83
VRK3-216ENST00000599342 ACACAQ13085 2346 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 URB1O60287 2271 aaKnown RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 CACNB4O00305 520 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 RECQL5O94762 991 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 TNFP01375 233 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 CELA2BP08218 269 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 KELP23276 732 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 SERPINB6P35237 376 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 HSPA9P38646 679 aaKnown RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 CXADRP78310 365 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 TLE3Q04726 772 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 PIGHQ14442 188 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 DPYSL2Q16555 572 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 BOLA3Q53S33 107 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 FIGNQ5HY92 759 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 FOXR1Q6PIV2 292 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 LIPIQ6XZB0 460 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 CYP4V2Q6ZWL3 525 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 ATPAF2Q8N5M1 289 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 KYQ8NBH2 561 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 PDCD6IPQ8WUM4 868 aaKnown RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 KCNE4Q8WWG9 221 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 ECHDC3Q96DC8 303 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 PDXPQ96GD0 296 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 ATXN7L3BQ96GX2 97 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 ZNF599Q96NL3 588 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 NAP1L5Q96NT1 182 aaPredicted RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 PSKH2Q96QS6 385 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 ISCUQ9H1K1 167 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.85□□□□□ -0.83
VRK3-216ENST00000599342 GPR34Q9UPC5 381 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 ENTPD2Q9Y5L3 495 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 BZW2Q9Y6E2 419 aaKnown RBP9.85□□□□□ -0.83
VRK3-216ENST00000599342 LAMA5O15230 3695 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 CHD6Q8TD26 2715 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 APC2O95996 2303 aa9.85□□□□□ -0.83
VRK3-216ENST00000599342 TEX51A0A1B0GUA7 166 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 A0A1W2PQ67 120 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 TRAFD1O14545 582 aaPredicted RBP9.84□□□□□ -0.83
VRK3-216ENST00000599342 SOCS5O75159 536 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 IL1R2P27930 398 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 UCNP55089 124 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 TMPRSS3P57727 454 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 KIAA1024LP59773 190 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 SLC10A7Q0GE19 358 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 RALGDSQ12967 914 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 KRT81Q14533 505 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 NR1I3Q14994 352 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 ACOX1Q15067 660 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 IGF2-ASQ6U949 168 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 DPPA4Q7L190 304 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 GPR155Q7Z3F1 870 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 POLNQ7Z5Q5 900 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 ARL14Q8N4G2 192 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 PLA2G15Q8NCC3 412 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 OR6C4Q8NGE1 309 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 OR56A4Q8NGH8 313 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 CCDC74AQ96AQ1 378 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 CCDC97Q96F63 343 aaPredicted RBP9.84□□□□□ -0.83
VRK3-216ENST00000599342 HIC2Q96JB3 615 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 BBC3Q96PG8 261 aaPredicted RBP9.84□□□□□ -0.83
VRK3-216ENST00000599342 WDR26Q9H7D7 661 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 IP6K2Q9UHH9 426 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 MOSPD1Q9UJG1 213 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 ANAPC7Q9UJX3 599 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 RAI2Q9Y5P3 530 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 DGKBQ9Y6T7 804 aa9.84□□□□□ -0.83
VRK3-216ENST00000599342 KNTC1P50748 2209 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 LOC400499M0QZD8 3231 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 CCDC187A0A096LP49 1063 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 A0A1W2PQJ5 194 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 A8MX80 341 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 PDE2AO00408 941 aaPredicted RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 CPP00450 1065 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 SERPING1P05155 500 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 CYP2A6P11509 494 aaPredicted RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 AMPD1P23109 780 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 SSR1P43307 286 aaKnown RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 CDH6P55285 790 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 UBASH3AP57075 661 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 IQCB1Q15051 598 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 NFKBIBQ15653 356 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 TSR1Q2NL82 804 aaKnown RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 TAF8Q7Z7C8 310 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 TP53INP2Q8IXH6 220 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 WDR36Q8NI36 951 aaKnown RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 TEKT4Q8WW24 435 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 SYN2Q92777 582 aaPredicted RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 FUBP1Q96AE4 644 aaKnown RBP9.83□□□□□ -0.84
VRK3-216ENST00000599342 IQCDQ96DY2 449 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 NUS1Q96E22 293 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 SLC46A1Q96NT5 459 aa9.83□□□□□ -0.84
VRK3-216ENST00000599342 CSPG4P5Q96PW8 444 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms