RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 FCF1Q9Y324 198 aaKnown RBP9.55□□□□□ -0.88
TRIM28-208ENST00000597172 UTP11Q9Y3A2 253 aaKnown RBP9.55□□□□□ -0.88
TRIM28-208ENST00000597172 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 TCRBV7S3A2A0A539 114 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 TARSL2A2RTX5 802 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 F5H423 210 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ARHGAP33O14559 1287 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 DNALI1O14645 258 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ATP9BO43861 1147 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 STK10O94804 968 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 APODP05090 189 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ATP5BP06576 529 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 MMP2P08253 660 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 SERPINF2P08697 491 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 CR2P20023 1033 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 PSMB4P28070 264 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 HOXD12P35452 270 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 TNFRSF4P43489 277 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 CARSP49589 748 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 TERF1P54274 439 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 NSUN2Q08J23 767 aaKnown RBP eCLIP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 DLG2Q15700 870 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 C4orf17Q53FE4 359 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 FAXCQ5TGI0 409 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ANKRD22Q5VYY1 191 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ALG1LQ6GMV1 187 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 C4orf22Q6V702 233 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ARHGEF18Q6ZSZ5 1173 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 KLHDC8BQ8IXV7 354 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 GALNT15Q8N3T1 639 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ATP11CQ8NB49 1132 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 SPATA22Q8NHS9 363 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 RPLP0P6Q8NHW5 317 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 CPT1BQ92523 772 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 TADA1Q96BN2 335 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 IMP4Q96G21 291 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 OXNAD1Q96HP4 312 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 FCRL5Q96RD9 977 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 P2RY13Q9BPV8 354 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 FERMT1Q9BQL6 677 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 MGME1Q9BQP7 344 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 MLPHQ9BV36 600 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 CINPQ9BW66 212 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 CIPCQ9C0C6 399 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 RAB17Q9H0T7 212 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 GBA3Q9H227 469 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 CAPN10Q9HC96 672 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 RAB6BQ9NRW1 208 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ASIC3Q9UHC3 531 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 PILRBQ9UKJ0 227 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 TPX2Q9ULW0 747 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 STARD13Q9Y3M8 1113 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 FARP1Q9Y4F1 1045 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ICE1Q9Y2F5 2266 aa9.54□□□□□ -0.88
TRIM28-208ENST00000597172 COL5A1P20908 1838 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 ATXN2Q99700 1313 aaKnown RBP9.54□□□□□ -0.88
TRIM28-208ENST00000597172 FAM149AA5PLN7 773 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 TTC34A8MYJ7 566 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 INSIG1O15503 277 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SEC31AO94979 1220 aaKnown RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 MT-CYBP00156 380 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ASLP04424 464 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SRPRAP08240 638 aaKnown RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 HLA-EP13747 358 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ITIH2P19823 946 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ITPKAP23677 461 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ECHS1P30084 290 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ACTN2P35609 894 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 FDFT1P37268 417 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 MAGEA6P43360 314 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 KIR2DL1P43626 348 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ITGA8P53708 1063 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 GEMIN4P57678 1058 aaKnown RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 CXADRP78310 365 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SKOR1P84550 965 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 RHDQ02161 417 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 DSC2Q02487 901 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ITKQ08881 620 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SEMA5AQ13591 1074 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 LY6DQ14210 128 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ZNF235Q14590 738 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 KCNJ11Q14654 390 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 EIF4HQ15056 248 aaKnown RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 PREPLQ4J6C6 727 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 SYCP2LQ5T4T6 812 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ATXN7L2Q5T6C5 722 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 RNASEH2BQ5TBB1 312 aaKnown RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 LYSMD4Q5XG99 296 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 KCTD11Q693B1 232 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ITPRIPL1Q6GPH6 555 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 CCDC70Q6NSX1 233 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 HIBCHQ6NVY1 386 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ZDHHC24Q6UX98 284 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 PRICKLE2Q7Z3G6 844 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 NAT8LQ8N9F0 302 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 KDM1BQ8NB78 822 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 CCHCR1Q8TD31 782 aa9.53□□□□□ -0.88
TRIM28-208ENST00000597172 ART4Q93070 314 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms