RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 PRLP01236 227 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 ADRB1P08588 477 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 LHCGRP22888 699 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 RXRGP48443 463 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 ITKQ08881 620 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 KIF5AQ12840 1032 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 BNIP3Q12983 259 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 TFDP2Q14188 446 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 FZD2Q14332 565 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 PPP2R5EQ16537 467 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 WSCD2Q2TBF2 565 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 LIPIQ6XZB0 460 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 CCDC50Q8IVM0 306 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 SETD7Q8WTS6 366 aaKnown RBP20.22■□□□□ 0.83
SS18-218ENST00000581021 PIH1D2Q8WWB5 315 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 RBM41Q96IZ5 413 aaKnown RBP20.22■□□□□ 0.83
SS18-218ENST00000581021 CALR3Q96L12 384 aaKnown RBP20.22■□□□□ 0.83
SS18-218ENST00000581021 AMACRQ9UHK6 382 aa20.22■□□□□ 0.83
SS18-218ENST00000581021 PNMA8BQ9ULN7 279 aaPredicted RBP20.22■□□□□ 0.83
SS18-218ENST00000581021 PACSIN2Q9UNF0 486 aaPredicted RBP20.22■□□□□ 0.83
SS18-218ENST00000581021 NPIPB15A6NHN6 443 aaPredicted RBP20.21■□□□□ 0.83
SS18-218ENST00000581021 FPGTO14772 594 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 FLRT2O43155 660 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 SDC3O75056 442 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 FTCDO95954 541 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 TGM2P21980 687 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 CCZ1BP86790 482 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 CCZ1P86791 482 aaPredicted RBP20.21■□□□□ 0.83
SS18-218ENST00000581021 CNGA3Q16281 694 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 ZNF542PQ5EBM4 170 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 NYAP1Q6ZVC0 841 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 BBS12Q6ZW61 710 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 TSPAN33Q86UF1 283 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 PELI3Q8N2H9 469 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 MCCC1Q96RQ3 725 aaPredicted RBP20.21■□□□□ 0.83
SS18-218ENST00000581021 TDRD1Q9BXT4 1180 aaKnown RBP20.21■□□□□ 0.83
SS18-218ENST00000581021 SLC32A1Q9H598 525 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 GRPEL1Q9HAV7 217 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 SEPT10Q9P0V9 454 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 KLF15Q9UIH9 416 aa20.21■□□□□ 0.83
SS18-218ENST00000581021 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.21■□□□□ 0.83
SS18-218ENST00000581021 GOLGA8CPA6NN73 597 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 PPP1R12AO14974 1030 aaPredicted RBP20.2■□□□□ 0.82
SS18-218ENST00000581021 DFNA5O60443 496 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 ALPIP09923 528 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 PYGMP11217 842 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 CTPS1P17812 591 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 NR2C2P49116 596 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 POLR2LP62875 67 aaKnown RBP20.2■□□□□ 0.82
SS18-218ENST00000581021 SIM1P81133 766 aaPredicted RBP20.2■□□□□ 0.82
SS18-218ENST00000581021 SKOR1P84550 965 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 WASHC5Q12768 1159 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 AGERQ15109 404 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 ARMC12Q5T9G4 340 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 LRRC8AQ8IWT6 810 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 PAF1Q8N7H5 531 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 PLA2G15Q8NCC3 412 aa20.2■□□□□ 0.82
SS18-218ENST00000581021 SPTY2D1-AS1A0A0U1RR47 76 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 CCDC66A2RUB6 948 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 DDX3YO15523 660 aaKnown RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 ARHGAP6O43182 974 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 MAGEC1O60732 1142 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 RECQL5O94762 991 aaPredicted RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 HEXIM1O94992 359 aaKnown RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 ELFN1P0C7U0 828 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 PTPN3P26045 913 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 VIPR1P32241 457 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 PTPN7P35236 360 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 CD86P42081 329 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 RABIFP47224 123 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 ARRB1P49407 418 aaPredicted RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 PDE1CQ14123 709 aaPredicted RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 LRRC14Q15048 493 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 CBARPQ8N350 705 aaPredicted RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 FUBP1Q96AE4 644 aaKnown RBP20.19■□□□□ 0.82
SS18-218ENST00000581021 COQ10AQ96MF6 247 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 AGAP3Q96P47 875 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 QKIQ96PU8 341 aaKnown RBP eCLIP20.19■□□□□ 0.823e-6■■■■□ 23
SS18-218ENST00000581021 BRD8Q9H0E9 1235 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 C10orf88Q9H8K7 445 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 UCKL1Q9NWZ5 548 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 TOR4AQ9NXH8 423 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 PHTF1Q9UMS5 762 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 CHKBQ9Y259 395 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 PPIL1Q9Y3C6 166 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 CEP295Q9C0D2 2601 aa20.19■□□□□ 0.82
SS18-218ENST00000581021 CFAP69A5D8W1 941 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 LZTS3O60299 673 aaPredicted RBP20.18■□□□□ 0.82
SS18-218ENST00000581021 TOP3BO95985 862 aaKnown RBP20.18■□□□□ 0.82
SS18-218ENST00000581021 PMLP29590 882 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 CD68P34810 354 aaPredicted RBP20.18■□□□□ 0.82
SS18-218ENST00000581021 GRK6P43250 576 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 RWDD2BP57060 319 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 COPS2P61201 443 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 EIF2B5Q13144 721 aaKnown RBP20.18■□□□□ 0.82
SS18-218ENST00000581021 ZNF211Q13398 564 aaPredicted RBP20.18■□□□□ 0.82
SS18-218ENST00000581021 TRIP6Q15654 476 aaKnown RBP20.18■□□□□ 0.82
SS18-218ENST00000581021 KCTD16Q68DU8 428 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 RFLNAQ6ZTI6 216 aa20.18■□□□□ 0.82
SS18-218ENST00000581021 PEX26Q7Z412 305 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms