RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 TMEM52BQ4KMG9 183 aa17.16■□□□□ 0.34
NUP88-210ENST00000574867 KIAA1161Q6NSJ0 714 aa17.16■□□□□ 0.34
NUP88-210ENST00000574867 RAB17Q9H0T7 212 aa17.16■□□□□ 0.34
NUP88-210ENST00000574867 B4GALT6Q9UBX8 382 aa17.16■□□□□ 0.34
NUP88-210ENST00000574867 MBD1Q9UIS9 605 aaPredicted RBP17.16■□□□□ 0.34
NUP88-210ENST00000574867 ITM2BQ9Y287 266 aa17.16■□□□□ 0.34
NUP88-210ENST00000574867 AP3B1O00203 1094 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 LILRB5O75023 590 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 PRKCGP05129 697 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 ALPIP09923 528 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 CTPS1P17812 591 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 SPARCL1Q14515 664 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 TRIM69Q86WT6 500 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 PPIL6Q8IXY8 311 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 SLC25A41Q8N5S1 370 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 FRMD1Q8N878 549 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 CADM4Q8NFZ8 388 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 CXorf40AQ8TE69 158 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 CPT1BQ92523 772 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 APOL2Q9BQE5 337 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 GPR174Q9BXC1 333 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 MAGEE1Q9HCI5 957 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 HACD3Q9P035 362 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 INVSQ9Y283 1065 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 UTP11Q9Y3A2 253 aaKnown RBP17.15■□□□□ 0.34
NUP88-210ENST00000574867 FANCMQ8IYD8 2048 aa17.15■□□□□ 0.34
NUP88-210ENST00000574867 TBC1D3DA0A087WVF3 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3IA0A087WXS9 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3EA0A087X179 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3KA0A087X1G2 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3FA6NER0 549 aaPredicted RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 NPIPB15A6NHN6 443 aaPredicted RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 EFCAB8A8MWE9 144 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3LB9A6J9 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 DNALI1O14645 258 aaPredicted RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 MAP3K13O43283 966 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 USP12O75317 370 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 PCDH8O95206 1070 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3HP0C7X1 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 ZNF30P17039 623 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 HNF1BP35680 557 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 CHRNA4P43681 627 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 SARNPP82979 210 aaKnown RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 RPL6Q02878 288 aaKnown RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 CDH17Q12864 832 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 KCTD19Q17RG1 926 aaPredicted RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 GLE1Q53GS7 698 aaKnown RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 SPDYCQ5MJ68 293 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 SYCP2LQ5T4T6 812 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3GQ6DHY5 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3CQ6IPX1 549 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 PPP1R21Q6ZMI0 780 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TBC1D3Q8IZP1 549 aaPredicted RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 SNF8Q96H20 258 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 ERP44Q9BS26 406 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 IRF2BPLQ9H1B7 796 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 TRABDQ9H4I3 376 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 GGT7Q9UJ14 662 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 NUMA1Q14980 2115 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 FAM47DPA6NHR8 397 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 SMAPO00193 183 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 IVDP26440 423 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 RPS21P63220 83 aaKnown RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 RALGDSQ12967 914 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 ARHGEF7Q14155 803 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 RNASEH2BQ5TBB1 312 aaKnown RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 IZUMO3Q5VZ72 239 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 DENND5AQ6IQ26 1287 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 HOOK3Q86VS8 718 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 HORMAD1Q86X24 394 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 NOA1Q8NC60 698 aaKnown RBP17.14■□□□□ 0.33
NUP88-210ENST00000574867 BBOF1Q8ND07 529 aa17.14■□□□□ 0.33
NUP88-210ENST00000574867 C10orf142B7Z368 130 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 PSMD11O00231 422 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 RNGTTO60942 597 aaKnown RBP17.13■□□□□ 0.33
NUP88-210ENST00000574867 ELFN1P0C7U0 828 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 BCKDHBP21953 392 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 CCR5P51681 352 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 OLIG2Q13516 323 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 KIAA0895LQ68EN5 471 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 DNAAF3Q8N9W5 541 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 PRSS33Q8NF86 280 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 FOXJ1Q92949 421 aa17.13■□□□□ 0.33
NUP88-210ENST00000574867 C6orf106Q9H6K1 298 aaPredicted RBP17.13■□□□□ 0.33
NUP88-210ENST00000574867 PRR23AA6NEV1 266 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 HRO43593 1189 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 SEC31AO94979 1220 aaKnown RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 HEXIM1O94992 359 aaKnown RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 ITIH2P19823 946 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LHCGRP22888 699 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 NUDT1P36639 197 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 MORF4L2Q15014 288 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 TMEM259Q4ZIN3 620 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 CEP68Q76N32 757 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LPCAT2Q7L5N7 544 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 RAVER1Q8IY67 606 aaKnown RBP17.12■□□□□ 0.33
NUP88-210ENST00000574867 NAT8LQ8N9F0 302 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 MCUQ8NE86 351 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 LRRC1Q9BTT6 524 aa17.12■□□□□ 0.33
NUP88-210ENST00000574867 WRAP53Q9BUR4 548 aaKnown RBP17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms