RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 ENTPD2Q9Y5L3 495 aa18.21■□□□□ 0.51
CHD3-214ENST00000572579 RP1P56715 2156 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 A0A087X0T9 212 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 HTRA2O43464 458 aaPredicted RBP18.2■□□□□ 0.5
CHD3-214ENST00000572579 DXOO77932 396 aaKnown RBP18.2■□□□□ 0.5
CHD3-214ENST00000572579 SERPINC1P01008 464 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 FAM228BP0C875 321 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 MYBL1P10243 752 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 SRP54P61011 504 aaKnown RBP18.2■□□□□ 0.5
CHD3-214ENST00000572579 GABREP78334 506 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 CCDC173Q0VFZ6 552 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 RFTN1Q14699 578 aaPredicted RBP18.2■□□□□ 0.5
CHD3-214ENST00000572579 LBRQ14739 615 aaKnown RBP18.2■□□□□ 0.5
CHD3-214ENST00000572579 ERAP2Q6P179 960 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 DPPA4Q7L190 304 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 RD3Q7Z3Z2 195 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 SPACA3Q8IXA5 215 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 KYQ8NBH2 561 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 PCDH19Q8TAB3 1148 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 HSPH1Q92598 858 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 PDXPQ96GD0 296 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 POLR1BQ9H9Y6 1135 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 PCDH18Q9HCL0 1135 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 MRPL40Q9NQ50 206 aaKnown RBP18.2■□□□□ 0.5
CHD3-214ENST00000572579 PADI4Q9UM07 663 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 NENFQ9UMX5 172 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 PCDHGC4Q9Y5F7 938 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 SCINQ9Y6U3 715 aa18.2■□□□□ 0.5
CHD3-214ENST00000572579 A0A0U1RQS6 177 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 A0A1W2PQJ5 194 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 CFAP69A5D8W1 941 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 TMEM110-MUSTN1A8MSY1 372 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 NTN3O00634 580 aaPredicted RBP18.19■□□□□ 0.5
CHD3-214ENST00000572579 FUCA1P04066 466 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 CYP1A2P05177 515 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 ANXA6P08133 673 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 CD48P09326 243 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 DESP17661 470 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SERPINA4P29622 427 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 ACTN2P35609 894 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 TRIM23P36406 574 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 ARSEP51690 589 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 BCL2L1Q07817 233 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 MMRN1Q13201 1228 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 ATP13A4Q4VNC1 1196 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 BOLA3Q53S33 107 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 NIPA2Q8N8Q9 360 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 CPLX3Q8WVH0 158 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SPOCK2Q92563 424 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SYN2Q92777 582 aaPredicted RBP18.19■□□□□ 0.5
CHD3-214ENST00000572579 COQ10AQ96MF6 247 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SMIM14Q96QK8 99 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 CCDC3Q9BQI4 270 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 NOD2Q9HC29 1040 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 FGF22Q9HCT0 170 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 MRPL47Q9HD33 250 aaKnown RBP18.19■□□□□ 0.5
CHD3-214ENST00000572579 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.19■□□□□ 0.5
CHD3-214ENST00000572579 NCKIPSDQ9NZQ3 722 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SIRPGQ9P1W8 387 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 B4GALT6Q9UBX8 382 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SEPT3Q9UH03 358 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 SATB2Q9UPW6 733 aa18.19■□□□□ 0.5
CHD3-214ENST00000572579 H3BRJ5 948 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 MAXP61244 160 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 TRAF2Q12933 501 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 MTM1Q13496 603 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 ACAP1Q15027 740 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 TMCO4Q5TGY1 634 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 FSTL5Q8N475 847 aaPredicted RBP18.18■□□□□ 0.5
CHD3-214ENST00000572579 LZTR1Q8N653 840 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 CCL4L1Q8NHW4 92 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 FAM71BQ8TC56 605 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 PTCD2Q8WV60 388 aaKnown RBP18.18■□□□□ 0.5
CHD3-214ENST00000572579 TRIM11Q96F44 468 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 NAF1Q96HR8 494 aaKnown RBP18.18■□□□□ 0.5
CHD3-214ENST00000572579 ZNF599Q96NL3 588 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 RBM15Q96T37 977 aaKnown RBP eCLIP18.18■□□□□ 0.5
CHD3-214ENST00000572579 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.18■□□□□ 0.5
CHD3-214ENST00000572579 GULP1Q9UBP9 304 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 CAPN11Q9UMQ6 739 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 DGKBQ9Y6T7 804 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 KALRNO60229 2985 aa18.18■□□□□ 0.5
CHD3-214ENST00000572579 A0A1W2PQM1 296 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 RRP8O43159 456 aaKnown RBP18.17■□□□□ 0.5
CHD3-214ENST00000572579 RASGRP1O95267 797 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 GYPCP04921 128 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 LHCGRP22888 699 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 ZNF135P52742 658 aaPredicted RBP18.17■□□□□ 0.5
CHD3-214ENST00000572579 UBASH3AP57075 661 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 AP1S1P61966 158 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 PIGHQ14442 188 aaPredicted RBP18.17■□□□□ 0.5
CHD3-214ENST00000572579 CFAP58Q5T655 872 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 LVRNQ6Q4G3 990 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 PCSK4Q6UW60 755 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 RFLNAQ6ZTI6 216 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 B3GNT8Q7Z7M8 397 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 ARL10Q8N8L6 244 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 WDR92Q96MX6 357 aa18.17■□□□□ 0.5
CHD3-214ENST00000572579 ZNF578Q96N58 590 aaPredicted RBP18.17■□□□□ 0.5
CHD3-214ENST00000572579 SLC46A1Q96NT5 459 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms