RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ZCWPW2Q504Y3 356 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 ACBD5Q5T8D3 534 aaPredicted RBP18.17■□□□□ 0.5
CLK3-227ENST00000570296 TCERG1LQ5VWI1 586 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 NKAIN2Q5VXU1 208 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 TMEM71Q6P5X7 295 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 GDPD4Q6W3E5 623 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 CCL4L1Q8NHW4 92 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 ZDHHC1Q8WTX9 485 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 CTRCQ99895 268 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 SPATS2LQ9NUQ6 558 aaKnown RBP18.17■□□□□ 0.5
CLK3-227ENST00000570296 MPP6Q9NZW5 540 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 ENTPD4Q9Y227 616 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 COQ6Q9Y2Z9 468 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 POLEQ07864 2286 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 DNHD1Q96M86 4753 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 ABCA2Q9BZC7 2435 aa18.17■□□□□ 0.5
CLK3-227ENST00000570296 SPG11Q96JI7 2443 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 IGLV3-10A0A075B6K4 115 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 FGF1P05230 155 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 MYL1P05976 194 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 FURINP09958 794 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 GEMIN4P57678 1058 aaKnown RBP18.16■□□□□ 0.5
CLK3-227ENST00000570296 BIRC2Q13490 618 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 DCAF17Q5H9S7 520 aaPredicted RBP18.16■□□□□ 0.5
CLK3-227ENST00000570296 EFHC1Q5JVL4 640 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 DENND1BQ6P3S1 775 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 GUF1Q8N442 669 aaKnown RBP18.16■□□□□ 0.5
CLK3-227ENST00000570296 SERBP1Q8NC51 408 aaKnown RBP eCLIP18.16■□□□□ 0.5
CLK3-227ENST00000570296 ARHGEF2Q92974 986 aaKnown RBP18.16■□□□□ 0.5
CLK3-227ENST00000570296 MRPL40Q9NQ50 206 aaKnown RBP18.16■□□□□ 0.5
CLK3-227ENST00000570296 ARHGEF38Q9NXL2 777 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 TMEM9Q9P0T7 183 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 ZNF212Q9UDV6 495 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 SERTAD1Q9UHV2 236 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 ACTL7AQ9Y615 435 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 TACC2O95359 2948 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 SVILO95425 2214 aa18.16■□□□□ 0.5
CLK3-227ENST00000570296 ACTN4O43707 911 aaKnown RBP18.15■□□□□ 0.5
CLK3-227ENST00000570296 RECKO95980 971 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 PCCBP05166 539 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 HOXC4P09017 264 aaPredicted RBP18.15■□□□□ 0.5
CLK3-227ENST00000570296 CCNB1P14635 433 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 ITIH2P19823 946 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 DLSTP36957 453 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 STAT1P42224 750 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 GPLD1P80108 840 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 GNA12Q03113 381 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 PRR30Q53SZ7 412 aaPredicted RBP18.15■□□□□ 0.5
CLK3-227ENST00000570296 BRMS1LQ5PSV4 323 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 RESP18Q5W5W9 173 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 FUBP1Q96AE4 644 aaKnown RBP18.15■□□□□ 0.5
CLK3-227ENST00000570296 C1orf74Q96LT6 269 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 NT5C1BQ96P26 610 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 TKTL2Q9H0I9 626 aa18.15■□□□□ 0.5
CLK3-227ENST00000570296 CETN3O15182 167 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 ECEL1O95672 775 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 SEMA5AQ13591 1074 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 RAPGEF1Q13905 1077 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 TP53INP2Q8IXH6 220 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 PPM1KQ8N3J5 372 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 ZNF396Q96N95 335 aaPredicted RBP18.14■□□□□ 0.49
CLK3-227ENST00000570296 GSDMCQ9BYG8 508 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 WDCPQ9H6R7 721 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 MAPK8IP1Q9UQF2 711 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 MTMR6Q9Y217 621 aa18.14■□□□□ 0.49
CLK3-227ENST00000570296 PCDHGA9Q9Y5G4 932 aaKnown RBP18.14■□□□□ 0.49
CLK3-227ENST00000570296 ARHGAP10A1A4S6 786 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 CDC14CA4D256 554 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 DNAJB5O75953 348 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 XPAP23025 273 aaPredicted RBP18.13■□□□□ 0.49
CLK3-227ENST00000570296 ETFBP38117 255 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 CXCR3P49682 368 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 RAD51Q06609 339 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 PDCLQ13371 301 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 CUL4AQ13619 759 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 ZRANB3Q5FWF4 1079 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 ARHGAP22Q7Z5H3 698 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 TMEM135Q86UB9 458 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 CCDC47Q96A33 483 aaKnown RBP18.13■□□□□ 0.49
CLK3-227ENST00000570296 UNKQ9C0B0 810 aaKnown RBP18.13■□□□□ 0.49
CLK3-227ENST00000570296 ZMYND15Q9H091 742 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 MLXIPLQ9NP71 852 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 ANLNQ9NQW6 1124 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 PIGVQ9NUD9 493 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 TAAR2Q9P1P5 351 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 KCND3Q9UK17 655 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 CROTQ9UKG9 612 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 SNX10Q9Y5X0 201 aa18.13■□□□□ 0.49
CLK3-227ENST00000570296 I6L893 689 aaPredicted RBP18.12■□□□□ 0.49
CLK3-227ENST00000570296 PPM1DO15297 605 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 LRCH4O75427 683 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 ILF3Q12906 894 aaKnown RBP eCLIP18.12■□□□□ 0.49
CLK3-227ENST00000570296 PEX6Q13608 980 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 PAPD7Q5XG87 772 aaKnown RBP18.12■□□□□ 0.49
CLK3-227ENST00000570296 LYSMD3Q7Z3D4 306 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 NRROSQ86YC3 692 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 PLA2G15Q8NCC3 412 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 KAT5Q92993 513 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 HMCESQ96FZ2 354 aa18.12■□□□□ 0.49
CLK3-227ENST00000570296 POM121Q96HA1 1249 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms