RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 RD3Q7Z3Z2 195 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 LZTR1Q8N653 840 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 PLA2G15Q8NCC3 412 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 ZNF653Q96CK0 615 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 SLC46A1Q96NT5 459 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 THSD1Q9NS62 852 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 SCINQ9Y6U3 715 aa16.17■□□□□ 0.18
CLN3-229ENST00000567963 A0A1B0GTH6 734 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 TEX51A0A1B0GUA7 166 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 TK2O00142 265 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 PCCBP05166 539 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 SKILP12757 684 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 SCNN1BP51168 640 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 CXADRP78310 365 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 RALGDSQ12967 914 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 ATMQ13315 3056 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 GKN2Q86XP6 184 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 TP53INP2Q8IXH6 220 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 ARL10Q8N8L6 244 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 ATL2Q8NHH9 583 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 PCDH19Q8TAB3 1148 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 NSMCE3Q96MG7 304 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 WDR92Q96MX6 357 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 PSKH2Q96QS6 385 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 ISCUQ9H1K1 167 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 ZWILCHQ9H900 591 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 MRPL47Q9HD33 250 aaKnown RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 MYO1AQ9UBC5 1043 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 GULP1Q9UBP9 304 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 KLQ9UEF7 1012 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 PCDHGA8Q9Y5G5 932 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 NTN3O00634 580 aaPredicted RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 ATXN7O15265 892 aaPredicted RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 RECQL5O94762 991 aaPredicted RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 TNFP01375 233 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 MYBL1P10243 752 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 PCK1P35558 622 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 ZNF165P49910 485 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 RENBPP51606 427 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 SLC10A7Q0GE19 358 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 SPIDRQ14159 915 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 LBRQ14739 615 aaKnown RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 NR1I3Q14994 352 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 TCEA2Q15560 299 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 KCTD16Q68DU8 428 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 LSM14AQ8ND56 463 aaKnown RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 SLC39A7Q92504 469 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 TRIM11Q96F44 468 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 PRR11Q96HE9 360 aaPredicted RBP16.16■□□□□ 0.18
CLN3-229ENST00000567963 ZNF599Q96NL3 588 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 SIRPGQ9P1W8 387 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 SEPT3Q9UH03 358 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 DGKBQ9Y6T7 804 aa16.16■□□□□ 0.18
CLN3-229ENST00000567963 KALRNO60229 2985 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 ELFN1P0C7U0 828 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 IL1R2P27930 398 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 RBMS1P29558 406 aaKnown RBP16.15■□□□□ 0.18
CLN3-229ENST00000567963 TRIM23P36406 574 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 PDX1P52945 283 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 AP1S1P61966 158 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 DPYSL2Q16555 572 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 BOLA3Q53S33 107 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 BROXQ5VW32 411 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 DPPA4Q7L190 304 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 POLNQ7Z5Q5 900 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 KYQ8NBH2 561 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 KCNE4Q8WWG9 221 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 FUBP1Q96AE4 644 aaKnown RBP16.15■□□□□ 0.18
CLN3-229ENST00000567963 RBM15Q96T37 977 aaKnown RBP eCLIP16.15■□□□□ 0.18
CLN3-229ENST00000567963 DPH1Q9BZG8 443 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 RABGEF1Q9UJ41 708 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 GPR34Q9UPC5 381 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 KIF26BQ2KJY2 2108 aa16.15■□□□□ 0.18
CLN3-229ENST00000567963 TTC24A2A3L6 582 aaPredicted RBP16.14■□□□□ 0.17
CLN3-229ENST00000567963 TMEM202A6NGA9 273 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 A8MX80 341 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 PRB1P04280 392 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 HOXC4P09017 264 aaPredicted RBP16.14■□□□□ 0.17
CLN3-229ENST00000567963 TCF4P15884 667 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 GM2AP17900 193 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 UCNP55089 124 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 KIAA1024LP59773 190 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 SKOR1P84550 965 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 IQCB1Q15051 598 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 SMTNL2Q2TAL5 461 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 TMCO4Q5TGY1 634 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 PAF1Q8N7H5 531 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 OR56A4Q8NGH8 313 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 WDR36Q8NI36 951 aaKnown RBP16.14■□□□□ 0.17
CLN3-229ENST00000567963 SPOCK2Q92563 424 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 CCDC74AQ96AQ1 378 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 PDXPQ96GD0 296 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 ETNK2Q9NVF9 386 aa16.14■□□□□ 0.17
CLN3-229ENST00000567963 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.13■□□□□ 0.17
CLN3-229ENST00000567963 PMS2P1A4D2B8 440 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 CDRT15L2A8MXV6 281 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 H3BRJ5 948 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 CACNB4O00305 520 aaPredicted RBP16.13■□□□□ 0.17
CLN3-229ENST00000567963 KLK10O43240 276 aa16.13■□□□□ 0.17
CLN3-229ENST00000567963 HTRA2O43464 458 aaPredicted RBP16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms