RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 PCCBP05166 539 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 ELFN1P0C7U0 828 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 CTSEP14091 401 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 TSHRP16473 764 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 HK3P52790 923 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 CDH6P55285 790 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 SLC25A11Q02978 314 aaKnown RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 MTM1Q13496 603 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 NFATC4Q14934 902 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 LIPIQ6XZB0 460 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 EFL1Q7Z2Z2 1120 aaKnown RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 RD3Q7Z3Z2 195 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 FSTL5Q8N475 847 aaPredicted RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 ATPAF2Q8N5M1 289 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 ATL2Q8NHH9 583 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 SCG3Q8WXD2 468 aaKnown RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 BOCQ9BWV1 1114 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 XPO4Q9C0E2 1151 aaKnown RBP22.59■■□□□ 1.21
CLN3-215ENST00000565236 CLPBQ9H078 707 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 DOLKQ9UPQ8 538 aa22.59■■□□□ 1.21
CLN3-215ENST00000565236 EME2A4GXA9 379 aaPredicted RBP22.58■■□□□ 1.21
CLN3-215ENST00000565236 A8MX80 341 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 RASGRP1O95267 797 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 PEX11BO96011 259 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 RALGDSQ12967 914 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 ELOCQ15369 112 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 SKOR2Q2VWA4 1001 aaPredicted RBP22.58■■□□□ 1.21
CLN3-215ENST00000565236 C6orf132Q5T0Z8 1188 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 GUSBP11Q6P575 273 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 DPPA4Q7L190 304 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 PDCD6IPQ8WUM4 868 aaKnown RBP22.58■■□□□ 1.21
CLN3-215ENST00000565236 NSMCE3Q96MG7 304 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 NUDCD1Q96RS6 583 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 RCOR3Q9P2K3 495 aaPredicted RBP22.58■■□□□ 1.21
CLN3-215ENST00000565236 PCDHB1Q9Y5F3 818 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 PCDHGC4Q9Y5F7 938 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 CACNA1GO43497 2377 aa22.58■■□□□ 1.21
CLN3-215ENST00000565236 A0A1W2PQ67 120 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 ALPIP09923 528 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 SRP54P61011 504 aaKnown RBP22.57■■□□□ 1.2
CLN3-215ENST00000565236 ACOX1Q15067 660 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 ALG11Q2TAA5 492 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 MARC1Q5VT66 337 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 ESRP1Q6NXG1 681 aaKnown RBP22.57■■□□□ 1.2
CLN3-215ENST00000565236 PDZD3Q86UT5 571 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 PLA2G15Q8NCC3 412 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 TPCN2Q8NHX9 752 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 ZNF564Q8TBZ8 553 aaPredicted RBP22.57■■□□□ 1.2
CLN3-215ENST00000565236 WDR92Q96MX6 357 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 CTTNBP2NLQ9P2B4 639 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 KLQ9UEF7 1012 aa22.57■■□□□ 1.2
CLN3-215ENST00000565236 BRINP1O60477 761 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 SOCS5O75159 536 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 CSO75390 466 aaKnown RBP22.56■■□□□ 1.2
CLN3-215ENST00000565236 CR2P20023 1033 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 TGM2P21980 687 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 IL4RP24394 825 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 NFKBIAP25963 317 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 HNRNPH3P31942 346 aaKnown RBP22.56■■□□□ 1.2
CLN3-215ENST00000565236 MMP13P45452 471 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 MMRN1Q13201 1228 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 LVRNQ6Q4G3 990 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 LRRC49Q8IUZ0 686 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 SLC35F3Q8IY50 421 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 SDR16C5Q8N3Y7 309 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 PGBD5Q8N414 524 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 FGF11Q92914 225 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 NAT6Q93015 286 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 NOD2Q9HC29 1040 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 GULP1Q9UBP9 304 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 B4GALT6Q9UBX8 382 aa22.56■■□□□ 1.2
CLN3-215ENST00000565236 CACNB4O00305 520 aaPredicted RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 RRP8O43159 456 aaKnown RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 HTRA2O43464 458 aaPredicted RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 TLX3O43711 291 aaPredicted RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 USP12O75317 370 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 TNFP01375 233 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 CELA2BP08218 269 aaPredicted RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 ACTN2P35609 894 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 GJC1P36383 396 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 EIF2S3P41091 472 aaKnown RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 TCEA2Q15560 299 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 RALGPS1Q5JS13 557 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 LRRC69Q6ZNQ3 347 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 KCTD6Q8NC69 237 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 FAM71BQ8TC56 605 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 CTNNBL1Q8WYA6 563 aaPredicted RBP22.55■■□□□ 1.2
CLN3-215ENST00000565236 SPOCK2Q92563 424 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 MGME1Q9BQP7 344 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 UVRAGQ9P2Y5 699 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 PADI4Q9UM07 663 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 SHROOM3Q8TF72 1996 aa22.55■■□□□ 1.2
CLN3-215ENST00000565236 CBFA2T2O43439 604 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 CPP00450 1065 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 CD48P09326 243 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 H2AFZP0C0S5 128 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 KELP23276 732 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 MAXP61244 160 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 ATP13A4Q4VNC1 1196 aa22.54■■□□□ 1.2
CLN3-215ENST00000565236 PERM1Q5SV97 790 aa22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms