RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 PALMO75781 387 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 RECQL5O94762 991 aaPredicted RBP16.96■□□□□ 0.31
CLN3-211ENST00000564091 INHBCP55103 352 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 MTM1Q13496 603 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 AGERQ15109 404 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 TGIF1Q15583 401 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 ACAD10Q6JQN1 1059 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 SRLQ86TD4 932 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 GPR156Q8NFN8 814 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 ATL2Q8NHH9 583 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 TUBGCP5Q96RT8 1024 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 CCNL2Q96S94 520 aaPredicted RBP16.96■□□□□ 0.31
CLN3-211ENST00000564091 RBM15Q96T37 977 aaKnown RBP eCLIP16.96■□□□□ 0.31
CLN3-211ENST00000564091 STRADBQ9C0K7 418 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 DHX35Q9H5Z1 703 aaKnown RBP16.96■□□□□ 0.31
CLN3-211ENST00000564091 FGF22Q9HCT0 170 aa16.96■□□□□ 0.31
CLN3-211ENST00000564091 LIMA1Q9UHB6 759 aaKnown RBP16.96■□□□□ 0.31
CLN3-211ENST00000564091 ATXN7L1Q9ULK2 861 aaPredicted RBP16.96■□□□□ 0.31
CLN3-211ENST00000564091 AHCTF1Q8WYP5 2266 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 RP1P56715 2156 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 ARHGAP42A6NI28 874 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 A8MX80 341 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 EEF2KO00418 725 aaKnown RBP16.95■□□□□ 0.3
CLN3-211ENST00000564091 RALGDSQ12967 914 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 SRSF6Q13247 344 aaKnown RBP16.95■□□□□ 0.3
CLN3-211ENST00000564091 EIF3IQ13347 325 aaKnown RBP16.95■□□□□ 0.3
CLN3-211ENST00000564091 ARHGAP36Q6ZRI8 547 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 TAF8Q7Z7C8 310 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 PAF1Q8N7H5 531 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 FAM46DQ8NEK8 389 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 OR56A4Q8NGH8 313 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 NSMCE3Q96MG7 304 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 ATP13A3Q9H7F0 1226 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 LMBRD1Q9NUN5 540 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 PISDQ9UG56 409 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 PCSK1NQ9UHG2 260 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 AP4E1Q9UPM8 1137 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 PCDHGA7Q9Y5G6 932 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 DGKBQ9Y6T7 804 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 TENM4Q6N022 2769 aa16.95■□□□□ 0.3
CLN3-211ENST00000564091 TMCO5BA8MYB1 307 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 B8ZZF3 427 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 TMX2-CTNND1H3BSU7 103 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 DFFAO00273 331 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 CACNB4O00305 520 aaPredicted RBP16.94■□□□□ 0.3
CLN3-211ENST00000564091 NOBOXO60393 691 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 GM2AP17900 193 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 PSMA2P25787 234 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 SERPINA4P29622 427 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 HTR7P34969 479 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 CSNK1DP48730 415 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 BCL2L1Q07817 233 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 MAMLD1Q13495 774 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 OGFOD3Q6PK18 319 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 LIPIQ6XZB0 460 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 CCNJLQ8IV13 435 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 ARHGAP12Q8IWW6 846 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 PELI3Q8N2H9 469 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 ARFGAP1Q8N6T3 406 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 ANKRD20A12PQ8NF67 263 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 OR6C4Q8NGE1 309 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 CCL4L1Q8NHW4 92 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 ECHDC3Q96DC8 303 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 MED8Q96G25 268 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 TMEM74Q96NL1 305 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 ERGIC2Q96RQ1 377 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 PEBP4Q96S96 227 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 KCTD15Q96SI1 283 aaPredicted RBP16.94■□□□□ 0.3
CLN3-211ENST00000564091 CINPQ9BW66 212 aaPredicted RBP16.94■□□□□ 0.3
CLN3-211ENST00000564091 LGR4Q9BXB1 951 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 TMEM168Q9H0V1 697 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 DONSONQ9NYP3 566 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 MOSPD1Q9UJG1 213 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 LOXL2Q9Y4K0 774 aa16.94■□□□□ 0.3
CLN3-211ENST00000564091 TTC24A2A3L6 582 aaPredicted RBP16.93■□□□□ 0.3
CLN3-211ENST00000564091 CFAP69A5D8W1 941 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 B4DGG1 531 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 DAPK3O43293 454 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 ATMINO43313 823 aaPredicted RBP16.93■□□□□ 0.3
CLN3-211ENST00000564091 ELFN1P0C7U0 828 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 JMJD7P0C870 316 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 GLB1P16278 677 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 ERCC2P18074 760 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 ITIH1P19827 911 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 CDK11BP21127 795 aaKnown RBP16.93■□□□□ 0.3
CLN3-211ENST00000564091 CCKBRP32239 447 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 KIAA1024LP59773 190 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 AFMIDQ63HM1 303 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 RFX8Q6ZV50 586 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 TP53INP2Q8IXH6 220 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 NPWQ8N729 165 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 SNRNP25Q9BV90 132 aaKnown RBP16.93■□□□□ 0.3
CLN3-211ENST00000564091 DPEP2Q9H4A9 486 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 SP110Q9HB58 689 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 CYP4F12Q9HCS2 524 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 APPL1Q9UKG1 709 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 RNF215Q9Y6U7 377 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 COL6A6A6NMZ7 2263 aa16.93■□□□□ 0.3
CLN3-211ENST00000564091 LRRC10BA6NIK2 292 aa16.92■□□□□ 0.3
CLN3-211ENST00000564091 TRAFD1O14545 582 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms