RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 H3BM21 787 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 RAD51BO15315 384 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 TNFSF14O43557 240 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 TGM2P21980 687 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 CDKN2BP42772 138 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 PEX5P50542 639 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 PFN3P60673 137 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 COPS2P61201 443 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 DYNLT1P63172 113 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 AP1B1Q10567 949 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 PDE1CQ14123 709 aaPredicted RBP13.46□□□□□ -0.25
CLK3-213ENST00000563842 SHBQ15464 509 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 TAZQ16635 292 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 LIPIQ6XZB0 460 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 SPOCD1Q6ZMY3 1216 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 USP45Q70EL2 814 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 PARGQ86W56 976 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 GATAD2AQ86YP4 633 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 CCDC50Q8IVM0 306 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 TP53I13Q8NBR0 393 aaPredicted RBP13.46□□□□□ -0.25
CLK3-213ENST00000563842 ACRBPQ8NEB7 543 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 ATL2Q8NHH9 583 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 BTN2A2Q8WVV5 523 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 GPR27Q9NS67 375 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 FTSJ1Q9UET6 329 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 DNPEPQ9ULA0 475 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 TFR2Q9UP52 801 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 TTLL3Q9Y4R7 772 aa13.46□□□□□ -0.25
CLK3-213ENST00000563842 PTPRBP23467 1997 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 TTC24A2A3L6 582 aaPredicted RBP13.45□□□□□ -0.26
CLK3-213ENST00000563842 MTSS1O43312 755 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 CST8O60676 142 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 PGLSO95336 258 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 LDOC1O95751 146 aaPredicted RBP13.45□□□□□ -0.26
CLK3-213ENST00000563842 JCHAINP01591 159 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 PRKCGP05129 697 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 ALPPL2P10696 532 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 VIPR1P32241 457 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 IGFALSP35858 605 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 EPHB1P54762 984 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 IFI35P80217 286 aaPredicted RBP13.45□□□□□ -0.26
CLK3-213ENST00000563842 SHC2P98077 582 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 TRAF2Q12933 501 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 FOXC1Q12948 553 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 BNIP3Q12983 259 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 ARHGEF7Q14155 803 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 PPP2R5EQ16537 467 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 KAZNQ674X7 775 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 TMEM139Q8IV31 216 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 SYCE1Q8N0S2 351 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 SLC22A18ASQ8N1D0 253 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 P3H4Q92791 437 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 SCRN2Q96FV2 425 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 LGMNQ99538 433 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 IL12RB2Q99665 862 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 GOLPH3Q9H4A6 298 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 DNAJC28Q9NX36 388 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 B4GALT6Q9UBX8 382 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 SALL4Q9UJQ4 1053 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 BTBD3Q9Y2F9 522 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 COQ6Q9Y2Z9 468 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 REXO2Q9Y3B8 237 aaKnown RBP13.45□□□□□ -0.26
CLK3-213ENST00000563842 PPIL1Q9Y3C6 166 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 PCDHA3Q9Y5H8 950 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 RAI2Q9Y5P3 530 aa13.45□□□□□ -0.26
CLK3-213ENST00000563842 RCCD1A6NED2 376 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 KCNK1O00180 336 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 PSMD11O00231 422 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 NRDCO43847 1150 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 PIAS2O75928 621 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 CSF2P04141 144 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 HLA-DQB2P05538 268 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 FTH1P19P0C7X4 201 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 CDK4P11802 303 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 CTNNA2P26232 953 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 HTR1BP28222 390 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 CTNNA1P35221 906 aaKnown RBP13.44□□□□□ -0.26
CLK3-213ENST00000563842 BLKP51451 505 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 RPL26P61254 145 aaKnown RBP13.44□□□□□ -0.26
CLK3-213ENST00000563842 DSC2Q02487 901 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 RALGDSQ12967 914 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 MTM1Q13496 603 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 IRF4Q15306 451 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 WSCD2Q2TBF2 565 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 NPNTQ6UXI9 565 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 MACC1Q6ZN28 852 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 EID2Q8N6I1 236 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 CCDC112Q8NEF3 446 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 TFB1MQ8WVM0 346 aaKnown RBP13.44□□□□□ -0.26
CLK3-213ENST00000563842 UBE2Q2Q8WVN8 375 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 NSMCE3Q96MG7 304 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 OLFM3Q96PB7 478 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 FERMT1Q9BQL6 677 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 LACRTQ9GZZ8 138 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 MBNL1Q9NR56 388 aaKnown RBP13.44□□□□□ -0.26
CLK3-213ENST00000563842 EVA1BQ9NVM1 165 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 AMFRQ9UKV5 643 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 RPL26L1Q9UNX3 145 aaKnown RBP13.44□□□□□ -0.26
CLK3-213ENST00000563842 EFR3BQ9Y2G0 817 aa13.44□□□□□ -0.26
CLK3-213ENST00000563842 DUSP10Q9Y6W6 482 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 110 ms