RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 KCNB1Q14721 858 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 STARD3Q14849 445 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 MLF2Q15773 248 aaPredicted RBP6.31□□□□□ -1.4
RTF1-204ENST00000558117 LETM2Q2VYF4 491 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 CEP78Q5JTW2 689 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 DAB2IPQ5VWQ8 1189 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 TCEAL6Q6IPX3 200 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 SLC18B1Q6NT16 456 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 VSTM1Q6UX27 236 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 DCDC5Q6ZRR9 648 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 CHCHD4Q8N4Q1 142 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 MRPL43Q8N983 215 aaKnown RBP6.31□□□□□ -1.4
RTF1-204ENST00000558117 FAM71DQ8N9W8 422 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 SPATA5Q8NB90 893 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 DEFB124Q8NES8 71 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 TCEAL3Q969E4 200 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 SH2D3AQ9BRG2 576 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 EDEM2Q9BV94 578 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 WDR12Q9GZL7 423 aaKnown RBP6.31□□□□□ -1.4
RTF1-204ENST00000558117 PRORYQ9H606 182 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 FSCN3Q9NQT6 498 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 ENTPD7Q9NQZ7 604 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 CYP39A1Q9NYL5 469 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 TAGLN3Q9UI15 199 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 FZD4Q9ULV1 537 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 VPS4AQ9UN37 437 aa6.31□□□□□ -1.4
RTF1-204ENST00000558117 UTP20O75691 2785 aaKnown RBP6.31□□□□□ -1.4
RTF1-204ENST00000558117 ANHXE9PGG2 379 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 J3KTA2 159 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 CAPN9O14815 690 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 PCDH17O14917 1159 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 TMIGD3P0DMS9 266 aaPredicted RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 EEF2P13639 858 aaKnown RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 EPCAMP16422 314 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 CASTP20810 708 aaKnown RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 HOXC8P31273 242 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 DGKQP52824 942 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 TIMM10P62072 90 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 HTR4Q13639 388 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 MFSD13AQ14CX5 517 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 LARS2Q15031 903 aaKnown RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 ZRSR2Q15696 482 aaKnown RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 PIK3AP1Q6ZUJ8 805 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 RASGRP3Q8IV61 690 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 THNSL1Q8IYQ7 743 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 COLGALT1Q8NBJ5 622 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 SCFD2Q8WU76 684 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 FAM118BQ9BPY3 351 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 CINPQ9BW66 212 aaPredicted RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 RNF146Q9NTX7 359 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 GAR1Q9NY12 217 aaKnown RBP6.3□□□□□ -1.4
RTF1-204ENST00000558117 MAFFQ9ULX9 164 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 AHCTF1Q8WYP5 2266 aa6.3□□□□□ -1.4
RTF1-204ENST00000558117 CACNA1FO60840 1977 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 A0A087WV62 115 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 SPAARA0A1B0GVQ0 90 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 WDR91A4D1P6 747 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 SHISA7A6NL88 538 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 AQP12BA6NM10 295 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 H0Y626 953 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 M0QZQ0 153 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 CIAO1O76071 339 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 TRIM16O95361 564 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 ARHGAP25P42331 645 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 RAE1P78406 368 aaKnown RBP6.29□□□□□ -1.4
RTF1-204ENST00000558117 ARHGAP1Q07960 439 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 ZNF626Q68DY1 528 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 TLDC1Q6P9B6 456 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 C1orf228Q6PIY5 440 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 GALNT16Q8N428 558 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 SLC22A17Q8WUG5 538 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 SMG7Q92540 1137 aaKnown RBP6.29□□□□□ -1.4
RTF1-204ENST00000558117 CRB3Q9BUF7 120 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 RPP25Q9BUL9 199 aaKnown RBP6.29□□□□□ -1.4
RTF1-204ENST00000558117 EFHD1Q9BUP0 239 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 KATNAL1Q9BW62 490 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 QTRT1Q9BXR0 403 aaKnown RBP6.29□□□□□ -1.4
RTF1-204ENST00000558117 PLCB1Q9NQ66 1216 aa6.29□□□□□ -1.4
RTF1-204ENST00000558117 F5P12259 2224 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 DSCR3O14972 297 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 NCAM2O15394 837 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 CHRNA1P02708 482 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 GHRP10912 638 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 ZNF81P51508 661 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 FOXD4Q12950 439 aaPredicted RBP6.28□□□□□ -1.4
RTF1-204ENST00000558117 SEMA3BQ13214 749 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 SLC14A1Q13336 389 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 SMC1AQ14683 1233 aaKnown RBP6.28□□□□□ -1.4
RTF1-204ENST00000558117 LPIN1Q14693 890 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 GRM4Q14833 912 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 P3H1Q32P28 736 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 C10orf62Q5T681 223 aaPredicted RBP6.28□□□□□ -1.4
RTF1-204ENST00000558117 MORN5Q5VZ52 161 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 ARL6IP4Q66PJ3 421 aaKnown RBP6.28□□□□□ -1.4
RTF1-204ENST00000558117 CCDC144NLQ6NUI1 221 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 MSANTD2Q6P1R3 559 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 RANBP10Q6VN20 620 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 CCNI2Q6ZMN8 369 aaPredicted RBP6.28□□□□□ -1.4
RTF1-204ENST00000558117 LONP2Q86WA8 852 aa6.28□□□□□ -1.4
RTF1-204ENST00000558117 CLASRPQ8N2M8 674 aaKnown RBP6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms