RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PCDH9Q9HC56 1237 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 FZD3Q9NPG1 666 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 TMEM9BQ9NQ34 198 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 B4GALT6Q9UBX8 382 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 TRHDEQ9UKU6 1024 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 RPL26L1Q9UNX3 145 aaKnown RBP13.66□□□□□ -0.22
SHMT2-228ENST00000557302 CHKBQ9Y259 395 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 CA5BQ9Y2D0 317 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 ANKRD6Q9Y2G4 727 aa13.66□□□□□ -0.22
SHMT2-228ENST00000557302 KNL1Q8NG31 2342 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 TRPM6Q9BX84 2022 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 TCRBV7S2A1N4TA0A589 114 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 CFAP69A5D8W1 941 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 KCNN4O15554 427 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 LZTS3O60299 673 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-228ENST00000557302 MAGEC1O60732 1142 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 WNT1P04628 370 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 PDHA1P08559 390 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 ELFN1P0C7U0 828 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 C6P13671 934 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 NFKB1P19838 968 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 VIPR1P32241 457 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 CD68P34810 354 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-228ENST00000557302 LIMK1P53667 647 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 BNC1Q01954 994 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 OVGP1Q12889 678 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 RALGDSQ12967 914 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 SLC14A2Q15849 920 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 KIF19Q2TAC6 998 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 ZNF569Q5MCW4 686 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 STPG1Q5TH74 334 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 PID1Q7Z2X4 250 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 IQCHQ86VS3 1027 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 MINDY1Q8N5J2 469 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 MFSD2AQ8NA29 543 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 DENND6BQ8NEG7 585 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 LPCAT1Q8NF37 534 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 SCRN2Q96FV2 425 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 LENG8Q96PV6 779 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-228ENST00000557302 MCCC1Q96RQ3 725 aaPredicted RBP13.65□□□□□ -0.22
SHMT2-228ENST00000557302 CDV3Q9UKY7 258 aaKnown RBP13.65□□□□□ -0.22
SHMT2-228ENST00000557302 PYCARDQ9ULZ3 195 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 R3HDM2Q9Y2K5 976 aaKnown RBP13.65□□□□□ -0.22
SHMT2-228ENST00000557302 JRKLQ9Y4A0 524 aa13.65□□□□□ -0.22
SHMT2-228ENST00000557302 A0A0J9YYE9 177 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 C4orf47A7E2U8 309 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 A8MX80 341 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 TLR4O00206 839 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 CDX4O14627 284 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-228ENST00000557302 ENC1O14682 589 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 FPGTO14772 594 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 RAD51BO15315 384 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 CEP104O60308 925 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 CER1O95813 267 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 PRLP01236 227 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 TRBC1P01850 177 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 CTPS1P17812 591 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 CTSKP43235 329 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 CLDN2P57739 230 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 ITPRIPL1Q6GPH6 555 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 LIPIQ6XZB0 460 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 GCNT7Q6ZNI0 430 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 SLC35F6Q8N357 371 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 SPATA22Q8NHS9 363 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 SLC35B2Q8TB61 432 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 FAM174AQ8TBP5 190 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 TADA1Q96BN2 335 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 IFT43Q96FT9 208 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 KLHDC7BQ96G42 594 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 KLF6Q99612 283 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-228ENST00000557302 ADGRE3Q9BY15 652 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 FRMD8P1Q9BZ68 369 aaPredicted RBP13.64□□□□□ -0.23
SHMT2-228ENST00000557302 RSPH14Q9UHP6 348 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 COQ6Q9Y2Z9 468 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 PPIL1Q9Y3C6 166 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 SNX11Q9Y5W9 270 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 HS3ST3A1Q9Y663 406 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 ANKRD36A6QL64 1941 aa13.64□□□□□ -0.23
SHMT2-228ENST00000557302 PCDH15Q96QU1 1955 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 PLXNA2O75051 1894 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 NPIPB15A6NHN6 443 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-228ENST00000557302 USP27XA6NNY8 438 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 A6NNZ2 444 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 H0Y8X5 98 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 PMPCBO75439 489 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 HEXIM1O94992 359 aaKnown RBP13.63□□□□□ -0.23
SHMT2-228ENST00000557302 MT-CYBP00156 380 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-228ENST00000557302 ALPIP09923 528 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 THEGLP0DJG4 465 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 SDHBP21912 280 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 HNF1BP35680 557 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 NXPH1P58417 271 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 CDK18Q07002 472 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 ARHGEF7Q14155 803 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 ACOX1Q15067 660 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 CNGA3Q16281 694 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 PCSK7Q16549 785 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 RSPO4Q2I0M5 234 aaPredicted RBP13.63□□□□□ -0.23
SHMT2-228ENST00000557302 HLA-BQ31612 363 aa13.63□□□□□ -0.23
SHMT2-228ENST00000557302 KYAT3Q6YP21 454 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms