RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NPIPB15A6NHN6 443 aaPredicted RBP17.57■□□□□ 0.4
SHMT2-225ENST00000556798 C6P13671 934 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 GNSP15586 552 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 TGM1P22735 817 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 HOXD12P35452 270 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 DPP6P42658 865 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 LIG3P49916 1009 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 ITPRIPL1Q6GPH6 555 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 MAIP1Q8WWC4 291 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 GORASP1Q9BQQ3 440 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 SLC17A9Q9BYT1 436 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 AASDHPPTQ9NRN7 309 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 SUSD2Q9UGT4 822 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 FAM153AQ9UHL3 310 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 ZNF148Q9UQR1 794 aa17.57■□□□□ 0.4
SHMT2-225ENST00000556798 KNL1Q8NG31 2342 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 A0A0J9YYE9 177 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 CFAP69A5D8W1 941 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 C5orf60A6NFR6 353 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 GOLGA8CPA6NN73 597 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 PGRMC1O00264 195 aaKnown RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 OPHN1O60890 802 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 LRP3O75074 770 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 TM7SF2O76062 418 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 PAK4O96013 591 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 TRBC1P01850 177 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 ZNF806P0C7X5 589 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 LHCGRP22888 699 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 SLC14A2Q15849 920 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 CSRP2Q16527 193 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 CCNG2Q16589 344 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 KCTD19Q17RG1 926 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 DUOXA1Q1HG43 343 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 NAPEPLDQ6IQ20 393 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 KDELC1Q6UW63 502 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 ARHGEF18Q6ZSZ5 1173 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 USP45Q70EL2 814 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 PRUNE1Q86TP1 453 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 TSPAN33Q86UF1 283 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 TAB3Q8N5C8 712 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 PRELID2Q8N945 189 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 IPMKQ8NFU5 416 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 IFT43Q96FT9 208 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 TRIB3Q96RU7 358 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 MLPHQ9BV36 600 aaPredicted RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 AP1M1Q9BXS5 423 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 EIF2AK3Q9NZJ5 1116 aaKnown RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 TPX2Q9ULW0 747 aaKnown RBP17.56■□□□□ 0.4
SHMT2-225ENST00000556798 ZKSCAN5Q9Y2L8 839 aa17.56■□□□□ 0.4
SHMT2-225ENST00000556798 CTAGE9A4FU28 777 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 KHNYNO15037 678 aaKnown RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 RAD51BO15315 384 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 ZNF189O75820 626 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 IFNB1P01574 187 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 ITGAVP06756 1048 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 ELFN1P0C7U0 828 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 ETS1P14921 441 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 TCP1P17987 556 aaKnown RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 HNRNPA2B1P22626 353 aaKnown RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 VIPR1P32241 457 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 HNF1BP35680 557 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 KCNJ1P48048 391 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 CSNK1EP49674 416 aaKnown RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 WNT3AP56704 352 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 IRX4P78413 519 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 CDK18Q07002 472 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 SGCGQ13326 291 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 CNGA3Q16281 694 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 QPCTQ16769 361 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 FAXCQ5TGI0 409 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 DENND2CQ68D51 928 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 LIPIQ6XZB0 460 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 KDM7AQ6ZMT4 941 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 PRR23CQ6ZRP0 262 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 CEP76Q8TAP6 659 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 RMDN1Q96DB5 314 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 TRIM44Q96DX7 344 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 SCRN2Q96FV2 425 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 CAPZA3Q96KX2 299 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 MRGPRX2Q96LB1 330 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 MCCC1Q96RQ3 725 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 C1QTNF2Q9BXJ5 285 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 TTC7AQ9ULT0 858 aaPredicted RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 DMTF1Q9Y222 760 aa17.55■□□□□ 0.4
SHMT2-225ENST00000556798 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.55■□□□□ 0.4
SHMT2-225ENST00000556798 PTPRZ1P23471 2315 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-225ENST00000556798 TDRD6O60522 2096 aaKnown RBP17.54■□□□□ 0.4
SHMT2-225ENST00000556798 PIEZO1Q92508 2521 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 A0A1B0GVT2 93 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 CAPN8A6NHC0 703 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 PRAMEF26H0Y7S4 382 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 H0Y8X5 98 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 CES2O00748 559 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 LZTS3O60299 673 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-225ENST00000556798 GCATO75600 419 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 HEXIM1O94992 359 aaKnown RBP17.54■□□□□ 0.4
SHMT2-225ENST00000556798 WNT1P04628 370 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 PIRTP0C851 137 aa17.54■□□□□ 0.4
SHMT2-225ENST00000556798 CYP2A6P11509 494 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-225ENST00000556798 NFKBIAP25963 317 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms