RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 C3orf30Q96M34 536 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 ZNF570Q96NI8 536 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 NOX4Q9NPH5 578 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 RIC8AQ9NPQ8 531 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 SMYD2Q9NRG4 433 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 SLCO3A1Q9UIG8 710 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 CARD8Q9Y2G2 431 aa3.86□□□□□ -1.79
SCFD1-216ENST00000555550 PRAC2D3DTV9 90 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 GUCY1B2O75343 617 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 TIPRLO75663 272 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 CLDN14O95500 239 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 CD58P19256 250 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 GPTP24298 496 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 STX2P32856 288 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 CLDN2P57739 230 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 TAF12Q16514 161 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 ZNF667Q5HYK9 610 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 LRRC8EQ6NSJ5 796 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 ANKRD18AQ8IVF6 992 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 SPEM1Q8N4L4 309 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 CD101Q93033 1021 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 BBS4Q96RK4 519 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 KXD1Q9BQD3 176 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 MXRA8Q9BRK3 442 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 SMARCAL1Q9NZC9 954 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 KIAA1456Q9P272 454 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 CNOT7Q9UIV1 285 aaKnown RBP3.85□□□□□ -1.79
SCFD1-216ENST00000555550 VDAC3Q9Y277 283 aa3.85□□□□□ -1.79
SCFD1-216ENST00000555550 ATXN2Q99700 1313 aaKnown RBP3.85□□□□□ -1.79
SCFD1-216ENST00000555550 A0A0U1RQF3 1178 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 NPIPB11E5RHQ5 1161 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 BCAT2O15382 392 aaPredicted RBP3.84□□□□□ -1.79
SCFD1-216ENST00000555550 PIP5K1CO60331 668 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 EDN2P20800 178 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 CHATP28329 748 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 EFNB1P98172 346 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 ECT2LQ008S8 904 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 ILF3Q12906 894 aaKnown RBP eCLIP3.84□□□□□ -1.79
SCFD1-216ENST00000555550 TNFAIP1Q13829 316 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 AMZ1Q400G9 498 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 ATP13A5Q4VNC0 1218 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 SETMARQ53H47 684 aaPredicted RBP3.84□□□□□ -1.79
SCFD1-216ENST00000555550 STPG1Q5TH74 334 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 TUBA1AQ71U36 451 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 SFR1Q86XK3 245 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 DSELQ8IZU8 1212 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 NAGSQ8N159 534 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 MAB21L3Q8N8X9 362 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 SCCPDHQ8NBX0 429 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 DBF4BQ8NFT6 615 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 SCLT1Q96NL6 688 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 TUBA1CQ9BQE3 449 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 PHF7Q9BWX1 381 aaPredicted RBP3.84□□□□□ -1.79
SCFD1-216ENST00000555550 TTYH1Q9H313 450 aaPredicted RBP3.84□□□□□ -1.79
SCFD1-216ENST00000555550 ZNF224Q9NZL3 707 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 SIX4Q9UIU6 781 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 HSF4Q9ULV5 492 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 FAM96BQ9Y3D0 163 aa3.84□□□□□ -1.79
SCFD1-216ENST00000555550 IGHV4OR15-8A0A075B7B6 117 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 A0A0G2JPF8 293 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 GOLGA6L10A0A0M3HER8 536 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 HNRNPCL3B7ZW38 293 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 TULP2O00295 520 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 EIF3FO00303 357 aaPredicted RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 WNT9BO14905 357 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 HNRNPCL1O60812 293 aaKnown RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 GALTP07902 379 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 IFIT1P09914 478 aaKnown RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 HNRNPCL4P0DMR1 293 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 ETFAP13804 333 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 DGKAP23743 735 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 HNRNPH1P31943 449 aaKnown RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 CDH15P55291 814 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 ARL16Q0P5N6 197 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 PPP2R5BQ15173 497 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 MMEL1Q495T6 779 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 WDR73Q6P4I2 378 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 CPLX2Q6PUV4 134 aaKnown RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 B3GNT6Q6ZMB0 384 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 C9orf139Q6ZV77 190 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 BBS12Q6ZW61 710 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 LRRC8DQ7L1W4 858 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 NOXA1Q86UR1 476 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 TMTC1Q8IUR5 882 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 ZCCHC9Q8N567 271 aaKnown RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 LMNTD1Q8N9Z9 388 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 SORCS1Q8WY21 1168 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 TANKQ92844 425 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 FBXL8Q96CD0 374 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 ELP4Q96EB1 424 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 FEM1CQ96JP0 617 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 INTS2Q9H0H0 1204 aaKnown RBP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 EVA1AQ9H8M9 152 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 RCOR1Q9UKL0 485 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 KCNS2Q9ULS6 477 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.83□□□□□ -1.8
SCFD1-216ENST00000555550 GPR52Q9Y2T5 361 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 NFE2L3Q9Y4A8 694 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 SNED1Q8TER0 1413 aa3.83□□□□□ -1.8
SCFD1-216ENST00000555550 CPED1A4D0V7 1026 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms