RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 ACRBPQ8NEB7 543 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 CALR3Q96L12 384 aaKnown RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 SCNM1Q9BWG6 230 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 NOD2Q9HC29 1040 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 TOR4AQ9NXH8 423 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 DTLQ9NZJ0 730 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 PCDHA13Q9Y5I0 950 aa13.14□□□□□ -0.31
SHMT2-211ENST00000554310 GOLGA4Q13439 2230 aaKnown RBP13.14□□□□□ -0.31
SHMT2-211ENST00000554310 AKAP13Q12802 2813 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 TDRD6O60522 2096 aaKnown RBP13.13□□□□□ -0.31
SHMT2-211ENST00000554310 H3BM21 787 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 APOL1O14791 398 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 SDC3O75056 442 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 PIAS2O75928 621 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 MAP3K6O95382 1288 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 PRKCGP05129 697 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 ATXN1LP0C7T5 689 aaKnown RBP13.13□□□□□ -0.31
SHMT2-211ENST00000554310 ELFN1P0C7U0 828 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 ZFXP17010 805 aaPredicted RBP13.13□□□□□ -0.31
SHMT2-211ENST00000554310 CES1P23141 567 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 LIG3P49916 1009 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 MAXP61244 160 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 HNRNPKP61978 463 aaKnown RBP eCLIP13.13□□□□□ -0.31
SHMT2-211ENST00000554310 YPEL5P62699 121 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 TRAF2Q12933 501 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 RALGDSQ12967 914 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 BNIP3Q12983 259 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 PTK2BQ14289 1009 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 LRRC14Q15048 493 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 CCDC13Q8IYE1 715 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 EID2Q8N6I1 236 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 CNDP2Q96KP4 475 aaKnown RBP13.13□□□□□ -0.31
SHMT2-211ENST00000554310 NSMCE3Q96MG7 304 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 CNTNAP3BQ96NU0 1288 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 CNTNAP3Q9BZ76 1288 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 NT5MQ9NPB1 228 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 DNAJC28Q9NX36 388 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 REXO2Q9Y3B8 237 aaKnown RBP13.13□□□□□ -0.31
SHMT2-211ENST00000554310 PCDHGC4Q9Y5F7 938 aa13.13□□□□□ -0.31
SHMT2-211ENST00000554310 LRP4O75096 1905 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 TTC24A2A3L6 582 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 ENC1O14682 589 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 FANCGO15287 622 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 LZTS3O60299 673 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 NEBLO76041 1014 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PGLSO95336 258 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 LDOC1O95751 146 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 TOP3BO95985 862 aaKnown RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 CSF2P04141 144 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 KRT10P13645 584 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 CCNB1P14635 433 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 CA4P22748 312 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 DGKAP23743 735 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PPIDQ08752 370 aaKnown RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 WSCD2Q2TBF2 565 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 ARMC12Q5T9G4 340 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 MACC1Q6ZN28 852 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 SLCO6A1Q86UG4 719 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 CHCHD4Q8N4Q1 142 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PNPLA1Q8N8W4 532 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 CCNYQ8ND76 341 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 OR4C6Q8NH72 309 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PDCD6IPQ8WUM4 868 aaKnown RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 MCCC1Q96RQ3 725 aaPredicted RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 WDR24Q96S15 920 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 SEMA3CQ99985 751 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 MAK16Q9BXY0 300 aaKnown RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 LZTFL1Q9NQ48 299 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 MBNL1Q9NR56 388 aaKnown RBP13.12□□□□□ -0.31
SHMT2-211ENST00000554310 RBM22Q9NW64 420 aaKnown RBP eCLIP13.12□□□□□ -0.311e-9■■■■□ 20
SHMT2-211ENST00000554310 B4GALT6Q9UBX8 382 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PHTF1Q9UMS5 762 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 COQ6Q9Y2Z9 468 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 MSRB2Q9Y3D2 182 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 HYOU1Q9Y4L1 999 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PCDHGA1Q9Y5H4 931 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 ALG6Q9Y672 507 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 PTPRBP23467 1997 aa13.12□□□□□ -0.31
SHMT2-211ENST00000554310 CACNA1BQ00975 2339 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 FAM221BA6H8Z2 402 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 NEMP2A6NFY4 417 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 PSMD11O00231 422 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 PPP1R12AO14974 1030 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-211ENST00000554310 HLA-DQB2P05538 268 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 ALPPL2P10696 532 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 CYP2A6P11509 494 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-211ENST00000554310 CDK4P11802 303 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 SPINK2P20155 84 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 VIPR1P32241 457 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 PEX5P50542 639 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 IFI35P80217 286 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-211ENST00000554310 ITKQ08881 620 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 SLC10A2Q12908 348 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-211ENST00000554310 ZNF211Q13398 564 aaPredicted RBP13.11□□□□□ -0.31
SHMT2-211ENST00000554310 MTM1Q13496 603 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 TUBB2AQ13885 445 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 PDK1Q15118 436 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 TPRG1LQ5T0D9 272 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 MFSD7Q6UXD7 560 aa13.11□□□□□ -0.31
SHMT2-211ENST00000554310 LIPIQ6XZB0 460 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms