RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 PCDHB12Q9Y5F1 795 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 TTC3P53804 2025 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 NLRC5Q86WI3 1866 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 G3V2L1 256 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ACOT8O14734 319 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 MSI1O43347 362 aaKnown RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 B4GALT3O60512 393 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ZBTB11O95625 1053 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 F9P00740 461 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 FUCA1P04066 466 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 CYBAP13498 195 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 HOXD11P31277 338 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 THPOP40225 353 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 PKNOX1P55347 436 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 MOGQ16653 247 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 SLC9B1Q4ZJI4 515 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 DCLRE1AQ6PJP8 1040 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 CLEC14AQ86T13 490 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 SPNS2Q8IVW8 549 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 TERB1Q8NA31 727 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ZNF784Q8NCA9 323 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ZNF420Q8TAQ5 688 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 ACBD6Q9BR61 282 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 DCUN1D5Q9BTE7 237 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 HGH1Q9BTY7 390 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 WDR41Q9HAD4 459 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 TCF7L2Q9NQB0 619 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 IARS2Q9NSE4 1012 aaKnown RBP12.32□□□□□ -0.44
SHMT2-207ENST00000553837 TXNDC16Q9P2K2 825 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 SFMBT1Q9UHJ3 866 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 GNPTGQ9UJJ9 305 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 NUDT5Q9UKK9 219 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 GABRQQ9UN88 632 aa12.32□□□□□ -0.44
SHMT2-207ENST00000553837 PTPRDP23468 1912 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-207ENST00000553837 HSPA4LO95757 839 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 MT-CYBP00156 380 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-207ENST00000553837 ODC1P11926 461 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 ADSLP30566 484 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-207ENST00000553837 TTKP33981 857 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 RXRGP48443 463 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 NSUN2Q08J23 767 aaKnown RBP eCLIP12.31□□□□□ -0.44
SHMT2-207ENST00000553837 CRHR2Q13324 411 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 ART3Q13508 389 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 DSC3Q14574 896 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 FAAH2Q6GMR7 532 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 KCNMB4Q86W47 210 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 TBC1D15Q8TC07 691 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 ADAMTS16Q8TE57 1224 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 SOCS4Q8WXH5 440 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 RNF34Q969K3 372 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 NACC2Q96BF6 587 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 KLHL32Q96NJ5 620 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 ANKRD60Q9BZ19 345 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 EFCAB1Q9HAE3 211 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 C20orf96Q9NUD7 363 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-207ENST00000553837 TRHDEQ9UKU6 1024 aa12.31□□□□□ -0.44
SHMT2-207ENST00000553837 A0A096LPK6 155 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 MANSC4A6NHS7 340 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 TRIM64CA6NLI5 447 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 FAM155AB1AL88 458 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 K7EPI3 171 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 DFFAO00273 331 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 GIPC1O14908 333 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 OXSR1O95747 527 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CYP11A1P05108 521 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 OR4Q2P0C623 313 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 GABRB3P28472 473 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 SPRP35270 261 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 FRG1Q14331 258 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 IL23RQ5VWK5 629 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CPSF7Q8N684 471 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 STARD8Q92502 1023 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 USP13Q92995 863 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 MRPL40Q9NQ50 206 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 ADAM28Q9UKQ2 775 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 TDRD15B5MCY1 1934 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 MYLKQ15746 1914 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 ERI2A8K979 691 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 TMEM114B3SHH9 223 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 M0QZQ0 153 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 GPR182O15218 404 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CACNG3O60359 315 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 ZNF623O75123 536 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 PAGE1O75459 146 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 STAMBPO95630 424 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 C2P06681 752 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 ENO3P13929 434 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CD1EP15812 388 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 NELFEP18615 380 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CSRP3P50461 194 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CDH15P55291 814 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 CAP1Q01518 475 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 SEPT6Q14141 434 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 RFTN1Q14699 578 aaPredicted RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 PUS10Q3MIT2 529 aaKnown RBP12.3□□□□□ -0.44
SHMT2-207ENST00000553837 DENND5AQ6IQ26 1287 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 NANOGP8Q6NSW7 305 aa12.3□□□□□ -0.44
SHMT2-207ENST00000553837 SCD5Q86SK9 330 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms