RNA–Protein interactions for RNA: ENST00000552828.5

CKAP4-202, Transcript of cytoskeleton associated protein 4, humanhuman

TSL 3

Gene CKAP4, Length 831 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-202ENST00000552828 CCNL2Q96S94 520 aaPredicted RBP11.95□□□□□ -0.5
CKAP4-202ENST00000552828 WRAP53Q9BUR4 548 aaKnown RBP11.95□□□□□ -0.5
CKAP4-202ENST00000552828 KLC2Q9H0B6 622 aa11.95□□□□□ -0.5
CKAP4-202ENST00000552828 ABHD10Q9NUJ1 306 aa11.95□□□□□ -0.5
CKAP4-202ENST00000552828 RABGEF1Q9UJ41 708 aa11.95□□□□□ -0.5
CKAP4-202ENST00000552828 CHD5Q8TDI0 1954 aa11.95□□□□□ -0.5
CKAP4-202ENST00000552828 HECTD1Q9ULT8 2610 aa11.95□□□□□ -0.5
CKAP4-202ENST00000552828 UBR5O95071 2799 aaPredicted RBP11.95□□□□□ -0.5
CKAP4-202ENST00000552828 SPTA1P02549 2419 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 GOLGA6L3A6NEY3 463 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 WASH4PA8MWX3 477 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 D6RAR5 112 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 NOBOXO60393 691 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 MFAP3LO75121 409 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 MYBL1P10243 752 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 HTR1BP28222 390 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 CCKBRP32239 447 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 RFC1P35251 1148 aaPredicted RBP11.94□□□□□ -0.5
CKAP4-202ENST00000552828 UGT1A5P35504 534 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 RHOAP61586 193 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 TBX2Q13207 712 aaPredicted RBP11.94□□□□□ -0.5
CKAP4-202ENST00000552828 SERINC3Q13530 473 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 GRM3Q14832 879 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 NFATC4Q14934 902 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 CYTH1Q15438 398 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 UGP2Q16851 508 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 PARP15Q460N3 678 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 KIAA1614Q5VZ46 1190 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 DCUN1D2Q6PH85 259 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 FOXR1Q6PIV2 292 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 WDR59Q6PJI9 974 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 SLFN11Q7Z7L1 901 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 B3GNT8Q7Z7M8 397 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 HID1Q8IV36 788 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 UMODL1-AS1Q8N2C9 162 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 PCDH19Q8TAB3 1148 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 TSACCQ96A04 125 aaPredicted RBP11.94□□□□□ -0.5
CKAP4-202ENST00000552828 CCDC74AQ96AQ1 378 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 ZNF641Q96N77 438 aaPredicted RBP11.94□□□□□ -0.5
CKAP4-202ENST00000552828 GFM1Q96RP9 751 aaKnown RBP11.94□□□□□ -0.5
CKAP4-202ENST00000552828 ISCUQ9H1K1 167 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 SUV39H2Q9H5I1 410 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 PARVAQ9NVD7 372 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 GULP1Q9UBP9 304 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 LHX3Q9UBR4 397 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 APPL1Q9UKG1 709 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 DGKBQ9Y6T7 804 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 BSNQ9UPA5 3926 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 RP1P56715 2156 aa11.94□□□□□ -0.5
CKAP4-202ENST00000552828 A0A087X0T9 212 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 A0A1W2PQM1 296 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 TCRBV5S1A1TA0A578 114 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 CFAP69A5D8W1 941 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 RASA4BC9J798 803 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 NVLO15381 856 aaKnown RBP11.93□□□□□ -0.5
CKAP4-202ENST00000552828 INSIG1O15503 277 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 RASA4O43374 803 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 RASGRP1O95267 797 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 GJB6O95452 261 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 FAM228BP0C875 321 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 CTSEP14091 401 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 GPD1P21695 349 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 EPHB2P29323 1055 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 SLC5A2P31639 672 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 AIF1P55008 147 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 SRP54P61011 504 aaKnown RBP11.93□□□□□ -0.5
CKAP4-202ENST00000552828 CCL7P80098 99 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 MAMLD1Q13495 774 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 INPP5AQ14642 412 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 PLEKHA7Q6IQ23 1121 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 BRAT1Q6PJG6 821 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 OGFOD3Q6PK18 319 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 XKR5Q6UX68 686 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 RAB11FIP2Q7L804 512 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 GKN2Q86XP6 184 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 DNAAF5Q86Y56 855 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 PYROXD2Q8N2H3 581 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 FBXO39Q8N4B4 442 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 GPR156Q8NFN8 814 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 HMCESQ96FZ2 354 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 RBM15Q96T37 977 aaKnown RBP eCLIP11.93□□□□□ -0.5
CKAP4-202ENST00000552828 APOOQ9BUR5 198 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 STRADBQ9C0K7 418 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 DEF6Q9H4E7 631 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 PCDH12Q9NPG4 1184 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 CNOT8Q9UFF9 292 aaKnown RBP11.93□□□□□ -0.5
CKAP4-202ENST00000552828 GPR34Q9UPC5 381 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 DOLKQ9UPQ8 538 aa11.93□□□□□ -0.5
CKAP4-202ENST00000552828 TLN1Q9Y490 2541 aaKnown RBP11.93□□□□□ -0.5
CKAP4-202ENST00000552828 SSU72P8A0A1W2PR75 194 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 AKR1B10O60218 316 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 BUB1BO60566 1050 aaPredicted RBP11.92□□□□□ -0.5
CKAP4-202ENST00000552828 RPLP0P05388 317 aaKnown RBP11.92□□□□□ -0.5
CKAP4-202ENST00000552828 HOXC4P09017 264 aaPredicted RBP11.92□□□□□ -0.5
CKAP4-202ENST00000552828 PNLIPP16233 465 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 DESP17661 470 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 MMP12P39900 470 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 CSNK1DP48730 415 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 LIG3P49916 1009 aa11.92□□□□□ -0.5
CKAP4-202ENST00000552828 ZNF143P52747 638 aaPredicted RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms