RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 MT-ND1P03886 318 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MPOP05164 745 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SERPINF2P08697 491 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SBK3P0C264 359 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SLC2A3P11169 496 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MYL4P12829 197 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 RAG1P15918 1043 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ATF6P18850 670 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GRK2P25098 689 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CNTFP26441 200 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 AGTR2P50052 363 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 BTG3Q14201 252 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TRIM71Q2Q1W2 868 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 FSCBQ5H9T9 825 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 STXBP5Q5T5C0 1151 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PAOXQ6QHF9 649 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PAQR3Q6TCH7 311 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 RANBP10Q6VN20 620 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GLT6D1Q7Z4J2 308 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 KBTBD2Q8IY47 623 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PIP4K2CQ8TBX8 421 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PPWD1Q96BP3 646 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MTFMTQ96DP5 389 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HAPLN3Q96S86 360 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 VAT1Q99536 393 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 IL12RB2Q99665 862 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GPR63Q9BZJ6 419 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SLC25A51Q9H1U9 297 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 COPS7BQ9H9Q2 264 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SCUBE2Q9NQ36 999 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 OXSMQ9NWU1 459 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MARCH5Q9NX47 278 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HACD3Q9P035 362 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 EVLQ9UI08 416 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 DICER1Q9UPY3 1922 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MAGEB16A2A368 324 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HEATR9A2RTY3 570 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 E5RI56 91 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CDC7O00311 574 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 STX7O15400 261 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CD3EAPO15446 510 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 COCHO43405 550 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 KLHL2O95198 593 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TGDSO95455 350 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 C1RP00736 705 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ANPEPP15144 967 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 RHOQP17081 205 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 XRCC1P18887 633 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ITGAXP20702 1163 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ALDH1A3P47895 512 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SLC34A1Q06495 639 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CAPRIN1Q14444 709 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TSNQ15631 228 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CCDC153Q494R4 210 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 LIPMQ5VYY2 423 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TIGD7Q6NT04 549 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 KLC3Q6P597 504 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TMEM207Q6UWW9 146 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 FAM151BQ6UXP7 276 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 DET1Q7L5Y6 550 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ARCQ7LC44 396 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ICA1LQ8NDH6 482 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 IRGQQ8WZA9 623 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TUBGCP3Q96CW5 907 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 BTN2A3PQ96KV6 586 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 NSMCE3Q96MG7 304 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GCNAQ96QF7 691 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GPR21Q99679 349 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GPR22Q99680 433 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 KIFC1Q9BW19 673 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 POLR1EQ9GZS1 481 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MRPL46Q9H2W6 279 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 MTG2Q9H4K7 406 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 EIF2B3Q9NR50 452 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TRPM5Q9NZQ8 1165 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 UBA2Q9UBT2 640 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 ZMYM5Q9UJ78 669 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TLR6Q9Y2C9 796 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PCDHB12Q9Y5F1 795 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SF3B1O75533 1304 aaKnown RBP eCLIP5.61□□□□□ -1.513e-6■■■■■ 137.9
LIMA1-215ENST00000552823 A0A1B0GTL3 188 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 BTN3A1O00481 513 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 NR5A2O00482 541 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CLGNO14967 610 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TRIM24O15164 1050 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HDAC3O15379 428 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 FGF10O15520 208 aaPredicted RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 CYP11A1P05108 521 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SKIP12755 728 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TYMPP19971 482 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 PRDX3P30048 256 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SKIV2L2P42285 1042 aaKnown RBP5.61□□□□□ -1.51
LIMA1-215ENST00000552823 TM4SF4P48230 202 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 HCAR3P49019 387 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 SLC11A2P49281 568 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 FOXA1P55317 472 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 RHOAP61586 193 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 GNA12Q03113 381 aa5.61□□□□□ -1.51
LIMA1-215ENST00000552823 RIPK1Q13546 671 aa5.61□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms