RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 LRRC1Q9BTT6 524 aa21.29■■□□□ 1
VPS29-206ENST00000549578 EIF2B3Q9NR50 452 aaKnown RBP21.29■■□□□ 1
VPS29-206ENST00000549578 PIH1D1Q9NWS0 290 aaKnown RBP21.29■■□□□ 1
VPS29-206ENST00000549578 TBC1D3DA0A087WVF3 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3IA0A087WXS9 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3EA0A087X179 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3KA0A087X1G2 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3FA6NER0 549 aaPredicted RBP21.28■■□□□ 1
VPS29-206ENST00000549578 CAPN8A6NHC0 703 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3LB9A6J9 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 H0Y858 1186 aa21.28■■□□□ 1
VPS29-206ENST00000549578 HRO43593 1189 aa21.28■■□□□ 1
VPS29-206ENST00000549578 PCDH8O95206 1070 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3HP0C7X1 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 GRIA1P42261 906 aa21.28■■□□□ 1
VPS29-206ENST00000549578 ELP6Q0PNE2 266 aa21.28■■□□□ 1
VPS29-206ENST00000549578 KCNJ11Q14654 390 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3GQ6DHY5 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3CQ6IPX1 549 aa21.28■■□□□ 1
VPS29-206ENST00000549578 NAPEPLDQ6IQ20 393 aa21.28■■□□□ 1
VPS29-206ENST00000549578 DENND5AQ6IQ26 1287 aa21.28■■□□□ 1
VPS29-206ENST00000549578 TBC1D3Q8IZP1 549 aaPredicted RBP21.28■■□□□ 1
VPS29-206ENST00000549578 NDUFAF2Q8N183 169 aa21.28■■□□□ 1
VPS29-206ENST00000549578 ZBTB44Q8NCP5 570 aa21.28■■□□□ 1
VPS29-206ENST00000549578 PRSS33Q8NF86 280 aa21.28■■□□□ 1
VPS29-206ENST00000549578 OR2T34Q8NGX1 318 aa21.28■■□□□ 1
VPS29-206ENST00000549578 GAB3Q8WWW8 586 aa21.28■■□□□ 1
VPS29-206ENST00000549578 WRAP53Q9BUR4 548 aaKnown RBP21.28■■□□□ 1
VPS29-206ENST00000549578 C6orf106Q9H6K1 298 aaPredicted RBP21.28■■□□□ 1
VPS29-206ENST00000549578 LRRC72A6NJI9 287 aa21.27■■□□□ 1
VPS29-206ENST00000549578 EFCAB8A8MWE9 144 aa21.27■■□□□ 1
VPS29-206ENST00000549578 MAP3K13O43283 966 aa21.27■■□□□ 1
VPS29-206ENST00000549578 NDUFS2O75306 463 aa21.27■■□□□ 1
VPS29-206ENST00000549578 SUN1O94901 812 aa21.27■■□□□ 1
VPS29-206ENST00000549578 FGF1P05230 155 aa21.27■■□□□ 1
VPS29-206ENST00000549578 LHCGRP22888 699 aa21.27■■□□□ 1
VPS29-206ENST00000549578 IVDP26440 423 aa21.27■■□□□ 1
VPS29-206ENST00000549578 MAGEA6P43360 314 aa21.27■■□□□ 1
VPS29-206ENST00000549578 RALGDSQ12967 914 aa21.27■■□□□ 1
VPS29-206ENST00000549578 DPPA4Q7L190 304 aa21.27■■□□□ 1
VPS29-206ENST00000549578 TSPAN33Q86UF1 283 aa21.27■■□□□ 1
VPS29-206ENST00000549578 DEFB119Q8N690 84 aa21.27■■□□□ 1
VPS29-206ENST00000549578 OR52K1Q8NGK4 314 aa21.27■■□□□ 1
VPS29-206ENST00000549578 HINFPQ9BQA5 517 aa21.27■■□□□ 1
VPS29-206ENST00000549578 PREBQ9HCU5 417 aa21.27■■□□□ 1
VPS29-206ENST00000549578 PCDHGA2Q9Y5H1 932 aa21.27■■□□□ 1
VPS29-206ENST00000549578 SPO11Q9Y5K1 396 aa21.27■■□□□ 1
VPS29-206ENST00000549578 DNALI1O14645 258 aaPredicted RBP21.26■□□□□ 0.99
VPS29-206ENST00000549578 TSPAN6O43657 245 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 TMEM63AO94886 807 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 TPSB2P20231 275 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 NFKBIAP25963 317 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 VIPR1P32241 457 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 PPP2CBP62714 309 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 PPP2CAP67775 309 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 SLC7A5Q01650 507 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 RPL6Q02878 288 aaKnown RBP21.26■□□□□ 0.99
VPS29-206ENST00000549578 TPSAB1Q15661 275 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 IZUMO3Q5VZ72 239 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 SLC36A4Q6YBV0 504 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 PPP1R21Q6ZMI0 780 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 ERP44Q9BS26 406 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 KDM4CQ9H3R0 1056 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 TPX2Q9ULW0 747 aaKnown RBP21.26■□□□□ 0.99
VPS29-206ENST00000549578 SNX24Q9Y343 169 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 ABCA7Q8IZY2 2146 aa21.26■□□□□ 0.99
VPS29-206ENST00000549578 MMP20O60882 483 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 RNGTTO60942 597 aaKnown RBP21.25■□□□□ 0.99
VPS29-206ENST00000549578 CYP2A6P11509 494 aaPredicted RBP21.25■□□□□ 0.99
VPS29-206ENST00000549578 RPL21P46778 160 aaKnown RBP21.25■□□□□ 0.99
VPS29-206ENST00000549578 TCF15Q12870 199 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 TMEM52BQ4KMG9 183 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 RNASEH2BQ5TBB1 312 aaKnown RBP21.25■□□□□ 0.99
VPS29-206ENST00000549578 SEL1L3Q68CR1 1132 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 CRTC1Q6UUV9 634 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 LINC00523Q86TU6 105 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 PPIL6Q8IXY8 311 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 CXorf40AQ8TE69 158 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 DPH5Q9H2P9 285 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 ARNT2Q9HBZ2 717 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 ZFR2Q9UPR6 939 aaKnown RBP21.25■□□□□ 0.99
VPS29-206ENST00000549578 SHOC2Q9UQ13 582 aa21.25■□□□□ 0.99
VPS29-206ENST00000549578 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 A0A1W2PQU0 124 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 SLC4A1P02730 911 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 TPH1P17752 444 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 MAT2AP31153 395 aaKnown RBP21.24■□□□□ 0.99
VPS29-206ENST00000549578 LIG3P49916 1009 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 CNGA3Q16281 694 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 LRRC66Q68CR7 880 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 TMEFF1Q8IYR6 380 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 NAT8LQ8N9F0 302 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 DNAAF3Q8N9W5 541 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 BLOC1S5Q8TDH9 187 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 SNF8Q96H20 258 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 LYSMD1Q96S90 227 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 PRRX2Q99811 253 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 MAGEE1Q9HCI5 957 aa21.24■□□□□ 0.99
VPS29-206ENST00000549578 UTP11Q9Y3A2 253 aaKnown RBP21.24■□□□□ 0.99
VPS29-206ENST00000549578 R4GN57 208 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms