RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 FAM136AQ96C01 138 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 FEM1CQ96JP0 617 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 TTPALQ9BTX7 342 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 TNFRSF12AQ9NP84 129 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 CREBZFQ9NS37 354 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 CRYL1Q9Y2S2 319 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 H7C4K7 107 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 IPO13O94829 963 aaKnown RBP18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 PIRTP0C851 137 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 HOXD9P28356 352 aaPredicted RBP18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 PLK1P53350 603 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 MTTPP55157 894 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 SMARCB1Q12824 385 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 ACAP2Q15057 778 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 C5orf22Q49AR2 442 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 ANKS3Q6ZW76 656 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 MAELQ96JY0 434 aaKnown RBP18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 DNAJC1Q96KC8 554 aaKnown RBP18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 TTLL2Q9BWV7 592 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 HMX1Q9NP08 348 aaPredicted RBP18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 NDE1Q9NXR1 346 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 GTSE1Q9NYZ3 720 aa18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP18.61■□□□□ 0.57
PRPF40B-208ENST00000548436 ANKRD36A6QL64 1941 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 SDHDO14521 159 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 GOT2P00505 430 aaKnown RBP18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 HLA-DPA1P20036 260 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 KCNC1P48547 511 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 NUDT2P50583 147 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 KPNA1P52294 538 aaPredicted RBP18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 SULT2A1Q06520 285 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 GPR158Q5T848 1215 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 KLC3Q6P597 504 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 RNF111Q6ZNA4 994 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 NPAS4Q8IUM7 802 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 OR7D4Q8NG98 312 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 OR13C4Q8NGS5 318 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 RP9Q8TA86 221 aaKnown RBP18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 PHF24Q9UPV7 400 aa18.6■□□□□ 0.57
PRPF40B-208ENST00000548436 TBKBP1A7MCY6 615 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 LIN7AO14910 233 aaPredicted RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 SLC22A2O15244 555 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ACSL4O60488 711 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 TRPA1O75762 1119 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 GJB5O95377 273 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 FGF1P05230 155 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 RBP1P09455 135 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ELAVL2Q12926 359 aaKnown RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 CYLC2Q14093 348 aaPredicted RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 SEMA3AQ14563 771 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ZNF549Q6P9A3 640 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 FAM126BQ8IXS8 530 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 LMNTD2Q8IXW0 634 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 FBXO22Q8NEZ5 403 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 SLC26A7Q8TE54 656 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 C2orf15Q8WU43 125 aaKnown RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 CCDC126Q96EE4 140 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 PHF21BQ96EK2 531 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 NSMCE3Q96MG7 304 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ZNF184Q99676 751 aaPredicted RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ZBTB26Q9HCK0 441 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 DNMT3LQ9UJW3 386 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 PACSIN3Q9UKS6 424 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 LRCH1Q9Y2L9 728 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 FIS1Q9Y3D6 152 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 COPG1Q9Y678 874 aaKnown RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ZFP37Q9Y6Q3 630 aaPredicted RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 GBF1Q92538 1859 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 CCDC162PA2VCL2 907 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 SMNDC1O75940 238 aaKnown RBP eCLIP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 EPOP01588 193 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 RPL17P18621 184 aaKnown RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 SP100P23497 879 aaPredicted RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ATP5C1P36542 298 aaKnown RBP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 TIAL1Q01085 375 aaKnown RBP eCLIP18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 GNA12Q03113 381 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 BFSP2Q13515 415 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ALG1LQ6GMV1 187 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 DSELQ8IZU8 1212 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 MIEF2Q96C03 454 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ZNF599Q96NL3 588 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 ALG9Q9H6U8 611 aa18.59■□□□□ 0.57
PRPF40B-208ENST00000548436 TRPC5OSA6NMA1 111 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 H3BNC9 293 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 CD3EAPO15446 510 aaKnown RBP18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 SKAP2O75563 359 aaPredicted RBP18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 SNUPNO95149 360 aaKnown RBP18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 GLP2RO95838 553 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 SLC4A1P02730 911 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 ADSLP30566 484 aaPredicted RBP18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 RPS24P62847 133 aaKnown RBP18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 ZRSR2Q15696 482 aaKnown RBP18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 ADGRG6Q86SQ4 1221 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 ISCA2Q86U28 154 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 KYQ8NBH2 561 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 HIPK4Q8NE63 616 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 BRSK1Q8TDC3 778 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 SEPT8Q92599 483 aa18.58■□□□□ 0.57
PRPF40B-208ENST00000548436 RCN3Q96D15 328 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms