RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 KANSL1Q7Z3B3 1105 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 TP53INP2Q8IXH6 220 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 SLC22A18ASQ8N1D0 253 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 EID2Q8N6I1 236 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 RAPGEF5Q92565 580 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 WRAP53Q9BUR4 548 aaKnown RBP11.88□□□□□ -0.51
HDAC4-216ENST00000544989 NOD2Q9HC29 1040 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 NT5MQ9NPB1 228 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 DNAJC28Q9NX36 388 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 NLGN3Q9NZ94 848 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 IMPACTQ9P2X3 320 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 PCDHA13Q9Y5I0 950 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 DOCK9Q9BZ29 2069 aa11.88□□□□□ -0.51
HDAC4-216ENST00000544989 TP53BP1Q12888 1972 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 PSMD11O00231 422 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 APOL1O14791 398 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 PPP1R12AO14974 1030 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 SCAMP1O15126 338 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 HYAL3O43820 417 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 PIAS2O75928 621 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 KRT1P04264 644 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 ATXN1LP0C7T5 689 aaKnown RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 CCNB1P14635 433 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 CKMT2P17540 419 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 COMTP21964 271 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 FECHP22830 423 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 NR2C2P49116 596 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 DUSP3P51452 185 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 RPL26P61254 145 aaKnown RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 ITKQ08881 620 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 BNIP3Q12983 259 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 MTM1Q13496 603 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 LRRC73Q5JTD7 316 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 SLC9A4Q6AI14 798 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 C11orf63Q6NUN7 778 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 SLCO6A1Q86UG4 719 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 RAVER1Q8IY67 606 aaKnown RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 CCDC13Q8IYE1 715 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 SDR16C5Q8N3Y7 309 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 PQLC3Q8N755 202 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 TP53I13Q8NBR0 393 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 CCNYQ8ND76 341 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 OR4C6Q8NH72 309 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 PDCD6IPQ8WUM4 868 aaKnown RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 SLC13A1Q9BZW2 595 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 RBM22Q9NW64 420 aaKnown RBP eCLIP11.87□□□□□ -0.511e-6■■■□□ 17.1
HDAC4-216ENST00000544989 DTLQ9NZJ0 730 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 SPASTQ9UBP0 616 aa11.87□□□□□ -0.51
HDAC4-216ENST00000544989 RPL26L1Q9UNX3 145 aaKnown RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 EPN1Q9Y6I3 576 aaPredicted RBP11.87□□□□□ -0.51
HDAC4-216ENST00000544989 C3orf70A6NLC5 250 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 BTNL10A8MVZ5 291 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PDE2AO00408 941 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 TPP1O14773 563 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 RFPL3O75679 317 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 NDUFA10O95299 355 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PGLSO95336 258 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 HOXC4P09017 264 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 JUNDP17535 347 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 KELP23276 732 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 CDC25BP30305 580 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 VIPR1P32241 457 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 HNF1BP35680 557 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 IGFALSP35858 605 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PPIDQ08752 370 aaKnown RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 ARHGEF7Q14155 803 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 IRF4Q15306 451 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 LIPIQ6XZB0 460 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 TMPRSS7Q7RTY8 843 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 ZSWIM9Q86XI8 627 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 RFX6Q8HWS3 928 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 RCOR2Q8IZ40 523 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PGBD5Q8N414 524 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 CHCHD4Q8N4Q1 142 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PLD5Q8N7P1 536 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 FAM181AQ8N9Y4 354 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 KDF1Q8NAX2 398 aaPredicted RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 TPCN2Q8NHX9 752 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 GLMNQ92990 594 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 SCRN2Q96FV2 425 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 RBM41Q96IZ5 413 aaKnown RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 SEMA3CQ99985 751 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 TOR4AQ9NXH8 423 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 RALYQ9UKM9 306 aaKnown RBP11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PPIL1Q9Y3C6 166 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 PCDHGC4Q9Y5F7 938 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 RAI2Q9Y5P3 530 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 ALG6Q9Y672 507 aa11.86□□□□□ -0.51
HDAC4-216ENST00000544989 GOLGA8CPA6NN73 597 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 CACNB4O00305 520 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-216ENST00000544989 MTSS1O43312 755 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 AQP9O43315 295 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 SDC3O75056 442 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 RECQL5O94762 991 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-216ENST00000544989 ZRANB2O95218 330 aaKnown RBP eCLIP11.85□□□□□ -0.51
HDAC4-216ENST00000544989 PYGLP06737 847 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 ALPIP09923 528 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 HOXB3P14651 431 aaPredicted RBP11.85□□□□□ -0.51
HDAC4-216ENST00000544989 ZNF30P17039 623 aa11.85□□□□□ -0.51
HDAC4-216ENST00000544989 ITIH2P19823 946 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms