RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 HPCAL4Q9UM19 191 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 MAN2B2Q9Y2E5 1009 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 PCDHGA3Q9Y5H0 932 aa12.92□□□□□ -0.34
USP28-212ENST00000544750 STMND1H3BQB6 276 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 HGSO14964 777 aaPredicted RBP12.91□□□□□ -0.34
USP28-212ENST00000544750 RAMP2O60895 175 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 FGFR1OPO95684 399 aaKnown RBP12.91□□□□□ -0.34
USP28-212ENST00000544750 CPNE6O95741 557 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 IGSF6O95976 241 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 MBD3O95983 291 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 FGF3P11487 239 aaPredicted RBP12.91□□□□□ -0.34
USP28-212ENST00000544750 MMP12P39900 470 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 KIAA1024LP59773 190 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 UGP2Q16851 508 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 PHF19Q5T6S3 580 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 TAF8Q7Z7C8 310 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 ATL2Q8NHH9 583 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 CCL4L1Q8NHW4 92 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 CASKIN2Q8WXE0 1202 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 JPH3Q8WXH2 748 aaPredicted RBP12.91□□□□□ -0.34
USP28-212ENST00000544750 HMCESQ96FZ2 354 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 TMEM168Q9H0V1 697 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 CDH19Q9H159 772 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 RDH14Q9HBH5 336 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 PCDH12Q9NPG4 1184 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 MRPL40Q9NQ50 206 aaKnown RBP12.91□□□□□ -0.34
USP28-212ENST00000544750 LHX3Q9UBR4 397 aa12.91□□□□□ -0.34
USP28-212ENST00000544750 GOLGA8SH3BPF8 625 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 TNFRSF10CO14798 259 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 BUB1O43683 1085 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 PIGNO95427 931 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 HOXC4P09017 264 aaPredicted RBP12.9□□□□□ -0.34
USP28-212ENST00000544750 LIFP15018 202 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 CYP11B1P15538 503 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 GM2AP17900 193 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 UGT1A3P35503 534 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 TRIM23P36406 574 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 LIG3P49916 1009 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 ATP11AP98196 1134 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 SERINC3Q13530 473 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 ARHGEF7Q14155 803 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 CYTH1Q15438 398 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 CLPPQ16740 277 aaPredicted RBP12.9□□□□□ -0.34
USP28-212ENST00000544750 C15orf59Q2T9L4 293 aaPredicted RBP12.9□□□□□ -0.34
USP28-212ENST00000544750 MIIPQ5JXC2 388 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 CCDC183Q5T5S1 534 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 TMEM164Q5U3C3 297 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 SPECC1LQ69YQ0 1117 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 RWDD4Q6NW29 188 aaKnown RBP12.9□□□□□ -0.34
USP28-212ENST00000544750 PIM3Q86V86 326 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 ZSWIM9Q86XI8 627 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 EMC1Q8N766 993 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 OR56A4Q8NGH8 313 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 TBC1D31Q96DN5 1066 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 TAAR9Q96RI9 348 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 SUV39H2Q9H5I1 410 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 DACH1Q9UI36 760 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 ANAPC2Q9UJX6 822 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 NOTCH2Q04721 2471 aa12.9□□□□□ -0.34
USP28-212ENST00000544750 IGHV5-10-1A0A0J9YXX1 117 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 FAM170AA1A519 330 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 CFAP69A5D8W1 941 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 B4DGG1 531 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 PCCBP05166 539 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 ATP1A2P50993 1020 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 OR1D5P58170 312 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 BPIFB4P59827 614 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 RHOAP61586 193 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 NOMO3P69849 1222 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 RALGDSQ12967 914 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 CCDC14Q49A88 953 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 MAP9Q49MG5 647 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 HSP90AA4PQ58FG1 418 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 CT47A1Q5JQC4 288 aaPredicted RBP12.89□□□□□ -0.35
USP28-212ENST00000544750 NRROSQ86YC3 692 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 CCDC185Q8N715 623 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 RCBTB1Q8NDN9 531 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 GPBAR1Q8TDU6 330 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 CENPIQ92674 756 aaPredicted RBP12.89□□□□□ -0.35
USP28-212ENST00000544750 NUDT22Q9BRQ3 303 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 SPRY4Q9C004 299 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 METTL5Q9NRN9 209 aaKnown RBP12.89□□□□□ -0.35
USP28-212ENST00000544750 SAMSN1Q9NSI8 373 aaKnown RBP12.89□□□□□ -0.35
USP28-212ENST00000544750 SPATS2LQ9NUQ6 558 aaKnown RBP12.89□□□□□ -0.35
USP28-212ENST00000544750 DAAM1Q9Y4D1 1078 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 MYO9AB2RTY4 2548 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 UNC79Q9P2D8 2635 aa12.89□□□□□ -0.35
USP28-212ENST00000544750 CACNA1DQ01668 2161 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 BUB1BO60566 1050 aaPredicted RBP12.88□□□□□ -0.35
USP28-212ENST00000544750 LSM8O95777 96 aaKnown RBP12.88□□□□□ -0.35
USP28-212ENST00000544750 PLEKP08567 350 aaPredicted RBP12.88□□□□□ -0.35
USP28-212ENST00000544750 CD1CP29017 333 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 LIMK2P53671 638 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 MAZP56270 477 aaKnown RBP12.88□□□□□ -0.35
USP28-212ENST00000544750 SQSTM1Q13501 440 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 MAN2A1Q16706 1144 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 CDO1Q16878 200 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 TPD52L1Q16890 204 aaPredicted RBP12.88□□□□□ -0.35
USP28-212ENST00000544750 STRADAQ7RTN6 431 aa12.88□□□□□ -0.35
USP28-212ENST00000544750 NOP9Q86U38 636 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms