RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	FGF1	P05230	155 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	RHOXF2B	P0C7M4	288 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ATXN1L	P0C7T5	689 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	PIRT	P0C851	137 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SP9	P0CG40	484 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	TPSB2	P20231	275 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	VIPR1	P32241	457 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ACSL1	P33121	698 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ADRA1A	P35348	466 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	GRIA4	P48058	902 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	NUBP1	P53384	320 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ADPRH	P54922	357 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SESN2	P58004	480 aa	Predicted RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	CDK16	Q00536	496 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	GUCY2D	Q02846	1103 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	PTPRR	Q15256	657 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	TPSAB1	Q15661	275 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	MAP7D1	Q3KQU3	841 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	GLE1	Q53GS7	698 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ANKRD22	Q5VYY1	191 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	KCTD11	Q693B1	232 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	RANBP10	Q6VN20	620 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SLC36A4	Q6YBV0	504 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	CEP68	Q76N32	757 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	DEFB119	Q8N690	84 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	CPT1B	Q92523	772 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SCRN2	Q96FV2	425 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SRPK1	Q96SB4	655 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	RHOXF2	Q9BQY4	288 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	FAM126A	Q9BYI3	521 aa	Predicted RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	GPR63	Q9BZJ6	419 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZSCAN32	Q9NX65	697 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	WSB2	Q9NYS7	404 aa	Predicted RBP	10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	SHOC2	Q9UQ13	582 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	ITM2B	Q9Y287	266 aa		10.2	□□□□□ -0.78
CPSF7-221	ENST00000543545	MYO18A	Q92614	2054 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	C1orf232	A0A0U1RR37	186 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545		A0A1W2PQU0	124 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	AP3B1	O00203	1094 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	AREL1	O15033	823 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	AP1G1	O43747	822 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	MMP20	O60882	483 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	RNGTT	O60942	597 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	SUN1	O94901	812 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	FSBP	O95073	299 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	ELFN1	P0C7U0	828 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	TDGF1	P13385	188 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	MAT2A	P31153	395 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	GRIA1	P42261	906 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	RPL21	P46778	160 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	LIG3	P49916	1009 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	ITGA8	P53708	1063 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	RPL6	Q02878	288 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	CDH17	Q12864	832 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	SRSF5	Q13243	272 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	SGCG	Q13326	291 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	SEPT6	Q14141	434 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	KCNJ11	Q14654	390 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	MORF4L2	Q15014	288 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	ACOX1	Q15067	660 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	ZNF528	Q3MIS6	628 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	TMEM52B	Q4KMG9	183 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	RNASEH2B	Q5TBB1	312 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	DUPD1	Q68J44	220 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	CRTC1	Q6UUV9	634 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	DPPA4	Q7L190	304 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	KLHDC8B	Q8IXV7	354 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	LRRN4CL	Q8ND94	238 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	OR2T34	Q8NGX1	318 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	SNX19	Q92543	992 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	KDM4C	Q9H3R0	1056 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	EPB41L5	Q9HCM4	733 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	PREB	Q9HCU5	417 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	BFAR	Q9NZS9	450 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	GGT7	Q9UJ14	662 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	NYNRIN	Q9P2P1	1898 aa	Known RBP	10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	KIAA1549L	Q6ZVL6	1849 aa		10.19	□□□□□ -0.78
CPSF7-221	ENST00000543545	TRIO	O75962	3097 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MIA3	Q5JRA6	1907 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MSANTD3-TMEFF1	A0A0A6YYJ0	341 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545		A0A0U1RQS6	177 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	ESYT3	A0FGR9	886 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	IGLON5	A6NGN9	336 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CAPN8	A6NHC0	703 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	NPIPB15	A6NHN6	443 aa	Predicted RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	C2orf81	A6NN90	581 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MEI4	A8MW99	385 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545		H0Y858	1186 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	SMAP	O00193	183 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	SEC31A	O94979	1220 aa	Known RBP	10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CLDN7	O95471	211 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	CRTAM	O95727	393 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	IGLV3-19	P01714	112 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	C7	P10643	843 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	BCKDHB	P21953	392 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	IVD	P26440	423 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MMP12	P39900	470 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	MAGEA6	P43360	314 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	NPY2R	P49146	381 aa		10.18	□□□□□ -0.78
CPSF7-221	ENST00000543545	PLTP	P55058	493 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms