RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 TMEM207Q6UWW9 146 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 TRIM67Q6ZTA4 783 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 ANKRD33Q7Z3H0 272 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 BBS5Q8N3I7 341 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 ENDOVQ8N8Q3 282 aaKnown RBP16.39■□□□□ 0.21
COL4A1-204ENST00000543140 DTX3LQ8TDB6 740 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 RMDN1Q96DB5 314 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 ZNF599Q96NL3 588 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 MGME1Q9BQP7 344 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 FIS1Q9Y3D6 152 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PRRG1O14668 218 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 CD3EAPO15446 510 aaKnown RBP16.39■□□□□ 0.21
COL4A1-204ENST00000543140 KDELR3O43731 214 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 MAGEC1O60732 1142 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 CLDN11O75508 207 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 TM7SF2O76062 418 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 GLP2RO95838 553 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 LTA4HP09960 611 aaKnown RBP16.39■□□□□ 0.21
COL4A1-204ENST00000543140 DNAJB1P25685 340 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 SERPINB5P36952 375 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PRKAA2P54646 552 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 EML3Q32P44 896 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 DNAL1Q4LDG9 190 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 TECRLQ5HYJ1 363 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 ADGRF1Q5T601 910 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 GPR158Q5T848 1215 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 AGAP9Q5VTM2 703 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 RNF219Q5W0B1 726 aaPredicted RBP16.39■□□□□ 0.21
COL4A1-204ENST00000543140 LINGO4Q6UY18 593 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 BRSK1Q8TDC3 778 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 BHMTQ93088 406 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PLD4Q96BZ4 506 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 PSKH2Q96QS6 385 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 MUC3BQ9H195 1237 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 SPO11Q9Y5K1 396 aa16.39■□□□□ 0.21
COL4A1-204ENST00000543140 NDST3O95803 873 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 SOD2P04179 222 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 SPATA31D3P0C874 917 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 TWF1Q12792 350 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 LSM12Q3MHD2 195 aaKnown RBP16.38■□□□□ 0.21
COL4A1-204ENST00000543140 KLHDC10Q6PID8 442 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 SPATA31D4Q6ZUB0 917 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 OVCA2Q8WZ82 227 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 VWCEQ96DN2 955 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 PHF21BQ96EK2 531 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 TSPAN17Q96FV3 270 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 TMEM169Q96HH4 297 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 SLC22A12Q96S37 553 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 TRPC7Q9HCX4 862 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 SLC7A8Q9UHI5 535 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 ATP11BQ9Y2G3 1177 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 EPOP01588 193 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 PDHA1P08559 390 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 ATP5F1P24539 256 aaPredicted RBP16.38■□□□□ 0.21
COL4A1-204ENST00000543140 PTDSS1P48651 473 aaKnown RBP16.38■□□□□ 0.21
COL4A1-204ENST00000543140 KPNA2P52292 529 aaKnown RBP16.38■□□□□ 0.21
COL4A1-204ENST00000543140 RAP1GDS1P52306 607 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 FSCBQ5H9T9 825 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 TMEM198Q66K66 360 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 NXNQ6DKJ4 435 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 FRMD7Q6ZUT3 714 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 STMN2Q93045 179 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 TRIB3Q96RU7 358 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 C1orf21Q9H246 121 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 NCKIPSDQ9NZQ3 722 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 MCM8Q9UJA3 840 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 PCDHGC4Q9Y5F7 938 aa16.38■□□□□ 0.21
COL4A1-204ENST00000543140 KCNC1P48547 511 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 KLF10Q13118 480 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 SH2D4BQ5SQS7 431 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 FAM219BQ5XKK7 198 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 KLC3Q6P597 504 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 ZNF549Q6P9A3 640 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 DNAJB7Q7Z6W7 309 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 PDCD6IPQ8WUM4 868 aaKnown RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 SCG3Q8WXD2 468 aaKnown RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 CMTM5Q96DZ9 223 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 MARK4Q96L34 752 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 UBXN10Q96LJ8 280 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 MYRFLQ96LU7 910 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 KLF16Q9BXK1 252 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 ALG9Q9H6U8 611 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 SCUBE2Q9NQ36 999 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 GTSE1Q9NYZ3 720 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 A0A1B0GVM2 712 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 TCAF2A6NFQ2 919 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 INSIG1O15503 277 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 SNAP91O60641 907 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 RPP40O75818 363 aaKnown RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 PSMG1O95456 288 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 PTPRRQ15256 657 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 CYTH1Q15438 398 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 CCDC6Q16204 474 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 ARMC3Q5W041 872 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 ALG1LQ6GMV1 187 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 RIPOR1Q6ZS17 1223 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 RYBPQ8N488 228 aaPredicted RBP16.37■□□□□ 0.21
COL4A1-204ENST00000543140 OR4L1Q8NH43 312 aa16.37■□□□□ 0.21
COL4A1-204ENST00000543140 DIS3LQ8TF46 1054 aaKnown RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms