RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 FAM47DPA6NHR8 397 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 SPINT1O43278 529 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 RAD51CO43502 376 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 PCDH8O95206 1070 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 PRKCGP05129 697 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 FGF1P05230 155 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 CYP2A6P11509 494 aaPredicted RBP17.2■□□□□ 0.34
LIG1-204ENST00000542460 CTPS1P17812 591 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 ITIH2P19823 946 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 HNF1BP35680 557 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 CDK16Q00536 496 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 SPARCL1Q14515 664 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 TMEM52BQ4KMG9 183 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 SIRPB2Q5JXA9 342 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 SLC25A41Q8N5S1 370 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 TRIM51Q9BSJ1 452 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 GPR174Q9BXC1 333 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 ARNT2Q9HBZ2 717 aa17.2■□□□□ 0.34
LIG1-204ENST00000542460 HRO43593 1189 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 USP12O75317 370 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 ALPIP09923 528 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 TPSB2P20231 275 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 MMP12P39900 470 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 MAGEA6P43360 314 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 CHRNA4P43681 627 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 OLIG2Q13516 323 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 TPSAB1Q15661 275 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 C8orf74Q6P047 294 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 DPPA4Q7L190 304 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 PCGF5Q86SE9 256 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 CADM4Q8NFZ8 388 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 LYSMD1Q96S90 227 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 SRPK1Q96SB4 655 aaKnown RBP17.19■□□□□ 0.34
LIG1-204ENST00000542460 APOL2Q9BQE5 337 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 PCED1AQ9H1Q7 454 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 B4GALT6Q9UBX8 382 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 GGT7Q9UJ14 662 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 TPX2Q9ULW0 747 aaKnown RBP17.19■□□□□ 0.34
LIG1-204ENST00000542460 ITM2BQ9Y287 266 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 MYO15AQ9UKN7 3530 aa17.19■□□□□ 0.34
LIG1-204ENST00000542460 CAPN8A6NHC0 703 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 H0Y858 1186 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 LILRB5O75023 590 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 BCKDHBP21953 392 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 IVDP26440 423 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 VIPR1P32241 457 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 TERF1P54274 439 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 MRPS25P82663 173 aaKnown RBP17.18■□□□□ 0.34
LIG1-204ENST00000542460 RPL6Q02878 288 aaKnown RBP17.18■□□□□ 0.34
LIG1-204ENST00000542460 KCNJ11Q14654 390 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 DENND5AQ6IQ26 1287 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 ZC3H14Q6PJT7 736 aaKnown RBP17.18■□□□□ 0.34
LIG1-204ENST00000542460 CPT1BQ92523 772 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 ERP44Q9BS26 406 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 MAGEE1Q9HCI5 957 aa17.18■□□□□ 0.34
LIG1-204ENST00000542460 UTP11Q9Y3A2 253 aaKnown RBP17.18■□□□□ 0.34
LIG1-204ENST00000542460 PRR23AA6NEV1 266 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 NPIPB15A6NHN6 443 aaPredicted RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 EFCAB8A8MWE9 144 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 A8MX80 341 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 DNALI1O14645 258 aaPredicted RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 RNGTTO60942 597 aaKnown RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 RPS21P63220 83 aaKnown RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 SARNPP82979 210 aaKnown RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 SEMG2Q02383 582 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 CDH17Q12864 832 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 SRSF5Q13243 272 aaKnown RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 ARHGEF7Q14155 803 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 PTPRRQ15256 657 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 SPDYCQ5MJ68 293 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 KIAA1161Q6NSJ0 714 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 CRTC1Q6UUV9 634 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 PPP1R21Q6ZMI0 780 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 TRIM69Q86WT6 500 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 HORMAD1Q86X24 394 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 PPIL6Q8IXY8 311 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 DNAAF3Q8N9W5 541 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 NOA1Q8NC60 698 aaKnown RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 CXorf40AQ8TE69 158 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 SMIM14Q96QK8 99 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 PHOX2BQ99453 314 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 LRRC1Q9BTT6 524 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 RAB17Q9H0T7 212 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 IRF2BPLQ9H1B7 796 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 C6orf106Q9H6K1 298 aaPredicted RBP17.17■□□□□ 0.34
LIG1-204ENST00000542460 HACD3Q9P035 362 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 USP34Q70CQ2 3546 aa17.17■□□□□ 0.34
LIG1-204ENST00000542460 A0A1W2PQU0 124 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 C10orf142B7Z368 130 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 AP3B1O00203 1094 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 HEXIM1O94992 359 aaKnown RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 ZNF30P17039 623 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 LIG3P49916 1009 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 CCR5P51681 352 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 RALGDSQ12967 914 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 GLE1Q53GS7 698 aaKnown RBP17.16■□□□□ 0.34
LIG1-204ENST00000542460 KIAA0895LQ68EN5 471 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 CEP68Q76N32 757 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 LPCAT2Q7L5N7 544 aa17.16■□□□□ 0.34
LIG1-204ENST00000542460 NAT8LQ8N9F0 302 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms