RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ECHDC3Q96DC8 303 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 B3GNT4Q9C0J1 378 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 FAM207AQ9NSI2 230 aaPredicted RBP13.66□□□□□ -0.22
SS18-204ENST00000539244 TAB2Q9NYJ8 693 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 DONSONQ9NYP3 566 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 SIK3Q9Y2K2 1263 aa13.66□□□□□ -0.22
SS18-204ENST00000539244 NUDT21O43809 227 aaKnown RBP13.65□□□□□ -0.22
SS18-204ENST00000539244 PRAMEF11O60813 436 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 WISP1O95388 367 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 PCCBP05166 539 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 JMJD7P0C870 316 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 HGFP14210 728 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 TRIM23P36406 574 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 STAT1P42224 750 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 NDST2P52849 883 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 RALGDSQ12967 914 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 HLTFQ14527 1009 aaKnown RBP eCLIP13.65□□□□□ -0.22
SS18-204ENST00000539244 TCEA2Q15560 299 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 TGIF1Q15583 401 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 PPP1R15BQ5SWA1 713 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 CDKAL1Q5VV42 579 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 SCYL2Q6P3W7 929 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 SPRED1Q7Z699 444 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 DTX1Q86Y01 620 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 JAMLQ86YT9 394 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 SLITRK4Q8IW52 837 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 PLA2G15Q8NCC3 412 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 OR56A4Q8NGH8 313 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 ENOX1Q8TC92 643 aaKnown RBP13.65□□□□□ -0.22
SS18-204ENST00000539244 OR1E3Q8WZA6 343 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 FUBP1Q96AE4 644 aaKnown RBP13.65□□□□□ -0.22
SS18-204ENST00000539244 CNPY3Q9BT09 278 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 FGF22Q9HCT0 170 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 NLRC4Q9NPP4 1024 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 PISDQ9UG56 409 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 LOXL2Q9Y4K0 774 aa13.65□□□□□ -0.22
SS18-204ENST00000539244 SPTA1P02549 2419 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 TMEM202A6NGA9 273 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 J3KR12 359 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 CACNB4O00305 520 aaPredicted RBP13.64□□□□□ -0.23
SS18-204ENST00000539244 RECQL5O94762 991 aaPredicted RBP13.64□□□□□ -0.23
SS18-204ENST00000539244 KELP23276 732 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 RPL7AP62424 266 aaKnown RBP13.64□□□□□ -0.23
SS18-204ENST00000539244 SRSF6Q13247 344 aaKnown RBP13.64□□□□□ -0.23
SS18-204ENST00000539244 KRT31Q15323 416 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 C14orf28Q4W4Y0 310 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 CFAP58Q5T655 872 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 AFMIDQ63HM1 303 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 DNAJC24Q6P3W2 148 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 LIPIQ6XZB0 460 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 USP53Q70EK8 1073 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 CAMK1DQ8IU85 385 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 FAM46DQ8NEK8 389 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 SPOCK2Q92563 424 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 MCEEQ96PE7 176 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 CMKLR1Q99788 373 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 VPS16Q9H269 839 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 ATP13A3Q9H7F0 1226 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 STARD5Q9NSY2 213 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 SEPT10Q9P0V9 454 aa13.64□□□□□ -0.23
SS18-204ENST00000539244 PRAMEF33A0A0G2JMD5 474 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 A0A1W2PQC6 194 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 ANKRD62A6NC57 917 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 ARHGAP42A6NI28 874 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 EIF3CLB5ME19 914 aaKnown RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 TRAFD1O14545 582 aaPredicted RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 PRAMEF10O60809 474 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 GM2AP17900 193 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 ITGB6P18564 788 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 ITIH1P19827 911 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 CD82P27701 267 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 SERPINA4P29622 427 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 RGRP47804 291 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 CSRP3P50461 194 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 TPI1P60174 286 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 NSUN2Q08J23 767 aaKnown RBP eCLIP13.63□□□□□ -0.23
SS18-204ENST00000539244 NFATC3Q12968 1075 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 NR1D2Q14995 579 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 FKBP15Q5T1M5 1219 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 DPPA4Q7L190 304 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 TAF8Q7Z7C8 310 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 SRLQ86TD4 932 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 C17orf82Q86X59 251 aaPredicted RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 TSEN2Q8NCE0 465 aaKnown RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 EIF3CQ99613 913 aaKnown RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 SEMA3CQ99985 751 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 SLC39A8Q9C0K1 460 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 TMEM168Q9H0V1 697 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 NUP62CLQ9H1M0 184 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 MRPL40Q9NQ50 206 aaKnown RBP13.63□□□□□ -0.23
SS18-204ENST00000539244 LRIT1Q9P2V4 623 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 RNF215Q9Y6U7 377 aa13.63□□□□□ -0.23
SS18-204ENST00000539244 PYCARD-AS1I3L0S3 204 aa13.62□□□□□ -0.23
SS18-204ENST00000539244 PALMO75781 387 aa13.62□□□□□ -0.23
SS18-204ENST00000539244 PRKCGP05129 697 aa13.62□□□□□ -0.23
SS18-204ENST00000539244 ELFN1P0C7U0 828 aa13.62□□□□□ -0.23
SS18-204ENST00000539244 SFTPCP11686 197 aa13.62□□□□□ -0.23
SS18-204ENST00000539244 KRT10P13645 584 aa13.62□□□□□ -0.23
SS18-204ENST00000539244 ETV5P41161 510 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms