RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ZNF557Q8N988 423 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 FRS2Q8WU20 508 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 AZIN2Q96A70 460 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 RNF25Q96BH1 459 aaPredicted RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC39A13Q96H72 371 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 RPL10LQ96L21 214 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 EPAS1Q99814 870 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 DUSP23Q9BVJ7 150 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 TLR10Q9BXR5 811 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC25A18Q9H1K4 315 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 GEMIN8Q9NWZ8 242 aaKnown RBP12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 ARHGEF38Q9NXL2 777 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 KCNK4Q9NYG8 393 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 SAR1BQ9Y6B6 198 aa12.66□□□□□ -0.38
CLSTN3-208ENST00000538933 CCDC187A0A096LP49 1063 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 CPED1A4D0V7 1026 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 F5H5T6 163 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 EEF2KO00418 725 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 SLC31A1O15431 190 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 DDX3YO15523 660 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 CEP104O60308 925 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 ACSL4O60488 711 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 SRGAP2O75044 1071 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 TCEA3O75764 348 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 URI1O94763 535 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 PRLRP16471 622 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 WT1P19544 449 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 CXCR5P32302 372 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 STK19P49842 368 aaPredicted RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 TPI1P60174 286 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 ATP13A4Q4VNC1 1196 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 ZNF542PQ5EBM4 170 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 PERM1Q5SV97 790 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 CCDC181Q5TID7 509 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 HIST2H2BCQ6DN03 193 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 TXNRD3NBQ6F5E7 133 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 ZCCHC8Q6NZY4 707 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 EFL1Q7Z2Z2 1120 aaKnown RBP12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 ABI3BPQ7Z7G0 1075 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 RFX6Q8HWS3 928 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 EXD1Q8NHP7 514 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 PBKQ96KB5 322 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 HAPLN3Q96S86 360 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 EPN3Q9H201 632 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 CARD9Q9H257 536 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 TMPRSS4Q9NRS4 437 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 GPR27Q9NS67 375 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 OR12D3Q9UGF7 316 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 PPM1HQ9ULR3 514 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 SNX12Q9UMY4 172 aa12.65□□□□□ -0.38
CLSTN3-208ENST00000538933 LRRK1Q38SD2 2015 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 DOCK4Q8N1I0 1966 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 PPFIA2O75334 1257 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 KDELR1P24390 212 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF135P52742 658 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 EIF4EBP2Q13542 120 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 DPYSL2Q16555 572 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF284Q2VY69 593 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 RABGAP1LQ5R372 815 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 KAZNQ674X7 775 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 RAP1GAP2Q684P5 730 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 RWDD4Q6NW29 188 aaKnown RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 CRTC1Q6UUV9 634 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 GCNT7Q6ZNI0 430 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 C14orf80Q86SX3 495 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 CCDC117Q8IWD4 279 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 CARNMT1Q8N4J0 409 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 HJURPQ8NCD3 748 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 ZNF548Q8NEK5 533 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 HTR3CQ8WXA8 447 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 ALG3Q92685 438 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 KLK6Q92876 244 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 KCTD15Q96SI1 283 aaPredicted RBP12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 OSBPL9Q96SU4 736 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 MYOCQ99972 504 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 PCDH18Q9HCL0 1135 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 KLF15Q9UIH9 416 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 PCDHGA4Q9Y5G9 962 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 HS3ST4Q9Y661 456 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 CSNK1G3Q9Y6M4 447 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 UNC13CQ8NB66 2214 aa12.64□□□□□ -0.39
CLSTN3-208ENST00000538933 A0A1W2PQU0 124 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 TACR2P21452 398 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 EPHB2P29323 1055 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 L1CAMP32004 1257 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 GGCXP38435 758 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 PAFAH1B1P43034 410 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 PEX5P50542 639 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 CLDN2P57739 230 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 COPS2P61201 443 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 HNRNPKP61978 463 aaKnown RBP eCLIP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 CYP4F2P78329 520 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 FZD2Q14332 565 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 CA9Q16790 459 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 SKIDA1Q1XH10 827 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 TFDP3Q5H9I0 405 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 MS4A13Q5J8X5 152 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 PIP5KL1Q5T9C9 394 aa12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 PAPD7Q5XG87 772 aaKnown RBP12.63□□□□□ -0.39
CLSTN3-208ENST00000538933 SPOCD1Q6ZMY3 1216 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms