RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 PTK2BQ14289 1009 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 IHHQ14623 411 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 SLC9A4Q6AI14 798 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 ALG1LQ6GMV1 187 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 VSIG1Q86XK7 387 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 RHOT1Q8IXI2 618 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 ZNF548Q8NEK5 533 aaPredicted RBP14.86□□□□□ -0.03
USP28-204ENST00000537642 HDAC11Q96DB2 347 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 SEMA3CQ99985 751 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 POLR1EQ9GZS1 481 aaKnown RBP14.86□□□□□ -0.03
USP28-204ENST00000537642 TCEAL2Q9H3H9 227 aaPredicted RBP14.86□□□□□ -0.03
USP28-204ENST00000537642 RBM22Q9NW64 420 aaKnown RBP eCLIP14.86□□□□□ -0.03
USP28-204ENST00000537642 IGF2RP11717 2491 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 LRP4O75096 1905 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 CACNA1BQ00975 2339 aa14.86□□□□□ -0.03
USP28-204ENST00000537642 SOWAHDA6NJG2 315 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 H3BM21 787 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 SCAMP1O15126 338 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 SPOPO43791 374 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 RFPL3O75679 317 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 NEBLO76041 1014 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 RECQL5O94762 991 aaPredicted RBP14.85□□□□□ -0.03
USP28-204ENST00000537642 PGLSO95336 258 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 PCCBP05166 539 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 C1SP09871 688 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 ELFN1P0C7U0 828 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 CCNB1P14635 433 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 CYLC1P35663 651 aaPredicted RBP14.85□□□□□ -0.03
USP28-204ENST00000537642 NOP2P46087 812 aaKnown RBP14.85□□□□□ -0.03
USP28-204ENST00000537642 DSC2Q02487 901 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 ITKQ08881 620 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 INPP5AQ14642 412 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 SMAD1Q15797 465 aaKnown RBP14.85□□□□□ -0.03
USP28-204ENST00000537642 ST3GAL2Q16842 350 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 MACC1Q6ZN28 852 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 MARCH9Q86YJ5 346 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 CCDC13Q8IYE1 715 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 RBFAQ8N0V3 343 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 PLA2G15Q8NCC3 412 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 RNF25Q96BH1 459 aaPredicted RBP14.85□□□□□ -0.03
USP28-204ENST00000537642 APOOQ9BUR5 198 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 GOLPH3Q9H4A6 298 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 DDX56Q9NY93 547 aaKnown RBP14.85□□□□□ -0.03
USP28-204ENST00000537642 NLGN3Q9NZ94 848 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 PHTF1Q9UMS5 762 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 RAI2Q9Y5P3 530 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 USP24Q9UPU5 2620 aa14.85□□□□□ -0.03
USP28-204ENST00000537642 A0A0A6YYK5 440 aaPredicted RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 NEMP2A6NFY4 417 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 K7ESM1 405 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 APOL1O14791 398 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 FZD6O60353 706 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 HLA-DQB2P05538 268 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PDHA1P08559 390 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 ACP1P24666 158 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 VIPR1P32241 457 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PEX5P50542 639 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PPIDQ08752 370 aaKnown RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 MTM1Q13496 603 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PTPRRQ15256 657 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 SPA17Q15506 151 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 CNGA3Q16281 694 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 HS1BP3Q53T59 392 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 ARMC12Q5T9G4 340 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 MFSD7Q6UXD7 560 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 NPNTQ6UXI9 565 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 NYAP1Q6ZVC0 841 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PHACTR4Q8IZ21 702 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 GALNT15Q8N3T1 639 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP28-204ENST00000537642 KDF1Q8NAX2 398 aaPredicted RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 CCNYQ8ND76 341 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 ARRDC2Q8TBH0 407 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 LMX1AQ8TE12 382 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PIH1D2Q8WWB5 315 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 COQ10AQ96MF6 247 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 ZNF830Q96NB3 372 aaPredicted RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 MCCC1Q96RQ3 725 aaPredicted RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 LGMNQ99538 433 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 MAK16Q9BXY0 300 aaKnown RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 AMACRQ9UHK6 382 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 PPIL1Q9Y3C6 166 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 TTLL3Q9Y4R7 772 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 OR1A2Q9Y585 309 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 HEY1Q9Y5J3 304 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 ALG6Q9Y672 507 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 EPN1Q9Y6I3 576 aaPredicted RBP14.84□□□□□ -0.03
USP28-204ENST00000537642 CSNK1G3Q9Y6M4 447 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 MYLKQ15746 1914 aa14.84□□□□□ -0.03
USP28-204ENST00000537642 LY6G6EA0A0G2JKS1 128 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 FAM149AA5PLN7 773 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 RCCD1A6NED2 376 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 NPIPB15A6NHN6 443 aaPredicted RBP14.83□□□□□ -0.04
USP28-204ENST00000537642 AQP9O43315 295 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 PSTPIP1O43586 416 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 HEXIM1O94992 359 aaKnown RBP14.83□□□□□ -0.04
USP28-204ENST00000537642 NDUFA10O95299 355 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 ALPPL2P10696 532 aa14.83□□□□□ -0.04
USP28-204ENST00000537642 MYF5P13349 255 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms