RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 TCAIMQ8N3R3 496 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 FAM109AQ8N4B1 249 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 METTL25Q8N6Q8 603 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 SRFBP1Q8NEF9 429 aaKnown RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 SLC24A4Q8NFF2 622 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 CEP70Q8NHQ1 597 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 ZNF420Q8TAQ5 688 aaPredicted RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 ZSCAN18Q8TBC5 510 aaPredicted RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 SCFD2Q8WU76 684 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 EAF2Q96CJ1 260 aaPredicted RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 ZNF486Q96H40 463 aaPredicted RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 TMEM80Q96HE8 168 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 RUNDC3BQ96NL0 473 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 C17orf62Q9BQA9 187 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 FERMT1Q9BQL6 677 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 NUP85Q9BW27 656 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 C1QTNF7Q9BXJ2 289 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 TEX13BQ9BXU2 312 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 QRSL1Q9H0R6 528 aaKnown RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 DHX33Q9H6R0 707 aaKnown RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 ZNF696Q9H7X3 374 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 TMEM206Q9H813 350 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 ECT2Q9H8V3 914 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 GOLGA2P5Q9HBQ8 144 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 CPNE5Q9HCH3 593 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 SAR1AQ9NR31 198 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 GDAP2Q9NXN4 497 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 OR6C2Q9NZP2 312 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 Q9UFV3 132 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 MOSPD1Q9UJG1 213 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 TINAGQ9UJW2 476 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 STOML2Q9UJZ1 356 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 RPS6KA6Q9UK32 745 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 DENND2AQ9ULE3 1009 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 GINS2Q9Y248 185 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 ASB4Q9Y574 426 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 HMGXB3Q12766 1538 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 GPATCH8Q9UKJ3 1502 aaKnown RBP5.56□□□□□ -1.52
CD44-236ENST00000533222 RAPGEF2Q9Y4G8 1499 aa5.56□□□□□ -1.52
CD44-236ENST00000533222 ADCY9O60503 1353 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 MN1Q10571 1320 aaPredicted RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 MYH11P35749 1972 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 A0A0A6YYK5 440 aaPredicted RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 PQLC2LA1A4F0 135 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 PRR5-ARHGAP8B1AHC4 643 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 EEF2KO00418 725 aaKnown RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 RASGRF2O14827 1237 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 SNX3O60493 162 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ATG13O75143 517 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 BCAR3O75815 825 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 RASAL1O95294 804 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 CLPTM1O96005 669 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 MT-ND3P03897 115 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 HMGCRP04035 888 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 PGK2P07205 417 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 HEXBP07686 556 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 MYL6BP14649 208 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 GJA1P17302 382 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 TFEBP19484 476 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ITIH1P19827 911 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 TCEA1P23193 301 aaKnown RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 GALNSP34059 522 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ETV4P43268 484 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 GPR3P46089 330 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 KCNC1P48547 511 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 CLK3P49761 638 aaKnown RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 MYL6P60660 151 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 TGFB2P61812 414 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 PRAMEP78395 509 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 SRSF2Q01130 221 aaKnown RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 NFATC3Q12968 1075 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 CDC16Q13042 620 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 FAM209BQ5JX69 171 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 SAPCD1Q5SSQ6 148 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 HES5Q5TA89 166 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ARHGEF16Q5VV41 709 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 XKRXQ6PP77 449 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 LRRC74BQ6ZQY2 392 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ANKS1BQ7Z6G8 1248 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 GPBP1Q86WP2 473 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 RASGRP3Q8IV61 690 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 COLGALT2Q8IYK4 626 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 KIAA0319LQ8IZA0 1049 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ADGRG5Q8IZF4 528 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 RNF113BQ8IZP6 322 aaKnown RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 ZNF619Q8N2I2 560 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 CENPSQ8N2Z9 138 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 CCDC33Q8N5R6 958 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ARFGAP1Q8N6T3 406 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 C7orf57Q8NEG2 295 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 IPMKQ8NFU5 416 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 PLBD2Q8NHP8 589 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 RAB3IL1Q8TBN0 382 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 SPPL3Q8TCT6 385 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 MGARPQ8TDB4 240 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 NXPE2Q96DL1 559 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 HSPBAP1Q96EW2 488 aa5.55□□□□□ -1.52
CD44-236ENST00000533222 ZBED3Q96IU2 234 aaPredicted RBP5.55□□□□□ -1.52
CD44-236ENST00000533222 FAR2Q96K12 515 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms