RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 MMP13P45452 471 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 TERF1P54274 439 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 ST8SIA6P61647 398 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 CAV1Q03135 178 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 PRKCQQ04759 706 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 PRPSAP1Q14558 356 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GRM3Q14832 879 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 SLC14A2Q15849 920 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 FUT11Q495W5 492 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 TMEM196Q5HYL7 178 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 CWF19L1Q69YN2 538 aaKnown RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 B4GALNT4Q76KP1 1039 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 C12orf40Q86WS4 652 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 KLHDC8BQ8IXV7 354 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 SH2D3CQ8N5H7 860 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 CCDC33Q8N5R6 958 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 TERB1Q8NA31 727 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 ATP11CQ8NB49 1132 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 NETO2Q8NC67 525 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 CCDC110Q8TBZ0 833 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 CHFRQ96EP1 664 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 AGAP3Q96P47 875 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 FRMD8Q9BZ67 464 aaPredicted RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 CPEB1Q9BZB8 566 aaKnown RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 TSPYL1Q9H0U9 437 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GLOD4Q9HC38 313 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 EPB41L5Q9HCM4 733 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 FBRSL1Q9HCM7 1045 aaKnown RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 GDF3Q9NR23 364 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 ARHGEF3Q9NR81 526 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 VPS45Q9NRW7 570 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 FAM114A2Q9NRY5 505 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GOLGA6AQ9NYA3 693 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 KLHL8Q9P2G9 620 aaPredicted RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 SUN2Q9UH99 717 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 GPN3Q9UHW5 284 aaPredicted RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 VPS51Q9UID3 782 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 TPX2Q9ULW0 747 aaKnown RBP7.49□□□□□ -1.21
CD44-228ENST00000528455 ERVW-1Q9UQF0 538 aa7.49□□□□□ -1.21
CD44-228ENST00000528455 CACNA1HO95180 2353 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 KIAA1549LQ6ZVL6 1849 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 C9orf172C9J069 976 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 K7EQS6 105 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 TRIM24O15164 1050 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CTIFO43310 598 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 PI15O43692 258 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 EIF4EBP3O60516 100 aaPredicted RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 SNAP91O60641 907 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ZNF821O75541 412 aaPredicted RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 HEXIM1O94992 359 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 METTL18O95568 372 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 POP4O95707 220 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 MT-CO1P00395 513 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ITGB2P05107 769 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ZSCAN5DPP0CG00 497 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 SRCP12931 536 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ETS1P14921 441 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CR2P20023 1033 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 MAGEA6P43360 314 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CHRNA4P43681 627 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 SERPINH1P50454 418 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 SNRPD1P62314 119 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 MRPS21P82921 87 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 SARNPP82979 210 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 SLC7A5Q01650 507 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 GRSF1Q12849 480 aaKnown RBP eCLIP7.48□□□□□ -1.21
CD44-228ENST00000528455 GPS1Q13098 491 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ZBTB17Q13105 803 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CALCOCO2Q13137 446 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 SEMA5AQ13591 1074 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CUL1Q13616 776 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ENPP2Q13822 863 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 DLG2Q15700 870 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 ERCC6LQ2NKX8 1250 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 FBXO43Q4G163 708 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CARD16Q5EG05 197 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 DGKKQ5KSL6 1271 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 WDR93Q6P2C0 686 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CCNI2Q6ZMN8 369 aaPredicted RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 ARHGEF18Q6ZSZ5 1173 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CD163Q86VB7 1156 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 HOOK3Q86VS8 718 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 SYNPOQ8N3V7 929 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 TMEM151AQ8N4L1 468 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 PCDH20Q8N6Y1 951 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 GLIS1Q8NBF1 620 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 MYRIPQ8NFW9 859 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 TTC8Q8TAM2 541 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 HCAR2Q8TDS4 363 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 TADA1Q96BN2 335 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 IMP4Q96G21 291 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 SNF8Q96H20 258 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 LRIG1Q96JA1 1093 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 RPL10LQ96L21 214 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 MRGPRX3Q96LB0 322 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 NUDCD1Q96RS6 583 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 FOXP3Q9BZS1 431 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 CIPCQ9C0C6 399 aa7.48□□□□□ -1.21
CD44-228ENST00000528455 POLR1EQ9GZS1 481 aaKnown RBP7.48□□□□□ -1.21
CD44-228ENST00000528455 MRPL18Q9H0U6 180 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms