RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FUCA1P04066 466 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 HLA-DQB2P05538 268 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 MMP13P45452 471 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 RABIFP47224 123 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 SUOXP51687 545 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 HADHBP55084 474 aaKnown RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 DSC2Q02487 901 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 BCL2L1Q07817 233 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 ZBTB17Q13105 803 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 SGCGQ13326 291 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 ZNF211Q13398 564 aaPredicted RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 INPP5AQ14642 412 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 GRM3Q14832 879 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 PDK2Q15119 407 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 CNGA3Q16281 694 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 CDKN3Q16667 212 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 HADHQ16836 314 aaKnown RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 RAD9BQ6WBX8 426 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 HSD11B1LQ7Z5J1 315 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 ZSCAN30Q86W11 494 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 CNGA4Q8IV77 575 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 SFTPA2Q8IWL1 248 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 ATPAF2Q8N5M1 289 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 KCTD6Q8NC69 237 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 ZNF548Q8NEK5 533 aaPredicted RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 CHD6Q8TD26 2715 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 CXorf40AQ8TE69 158 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 PTCD2Q8WV60 388 aaKnown RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 FATE1Q969F0 183 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 MRFAP1L1Q96HT8 127 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 OLFM3Q96PB7 478 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 MCCC1Q96RQ3 725 aaPredicted RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 LRRC61Q9BV99 259 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 LGR4Q9BXB1 951 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 DEF6Q9H4E7 631 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 DNAJC28Q9NX36 388 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 FTSJ1Q9UET6 329 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 INTUQ9ULD6 942 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 APOBEC2Q9Y235 224 aaKnown RBP10.71□□□□□ -0.69
CD44-227ENST00000528086 PPIL1Q9Y3C6 166 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 OR1A2Q9Y585 309 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 DUSP10Q9Y6W6 482 aa10.71□□□□□ -0.69
CD44-227ENST00000528086 NBEAQ8NFP9 2946 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ZNF487B1APH4 448 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 FPGTO14772 594 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 SCAMP1O15126 338 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 MATN3O15232 486 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 MAGEC1O60732 1142 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 SOCS5O75159 536 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 HEXIM1O94992 359 aaKnown RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 PGLSO95336 258 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 SOD1P00441 154 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 KRT7P08729 469 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ACP1P24666 158 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 SERPINA4P29622 427 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ARHGAP25P42331 645 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 MAGEA1P43355 309 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 NOP2P46087 812 aaKnown RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 PPIDQ08752 370 aaKnown RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 ELP6Q0PNE2 266 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 C1orf61Q13536 156 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 LRRC14Q15048 493 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 LLGL1Q15334 1064 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ST3GAL2Q16842 350 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ALG11Q2TAA5 492 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 CCDC157Q569K6 752 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 MARC1Q5VT66 337 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 LRRC38Q5VT99 294 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 PARGQ86W56 976 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 FAM174AQ8TBP5 190 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 KRT35Q92764 455 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 TSACCQ96A04 125 aaPredicted RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 RNF25Q96BH1 459 aaPredicted RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 HDAC11Q96DB2 347 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 APOLD1Q96LR9 279 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 IL12RB2Q99665 862 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 SEMA3CQ99985 751 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 APOOQ9BUR5 198 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 LACRTQ9GZZ8 138 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 BRD8Q9H0E9 1235 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ZNHIT6Q9NWK9 470 aaKnown RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 SAE1Q9UBE0 346 aaPredicted RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 ZMIZ1Q9ULJ6 1067 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 PCDHGA1Q9Y5H4 931 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 PCDHA13Q9Y5I0 950 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ST14Q9Y5Y6 855 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ALG6Q9Y672 507 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 ZFC3H1O60293 1989 aaKnown RBP10.7□□□□□ -0.7
CD44-227ENST00000528086 SCN8AQ9UQD0 1980 aa10.7□□□□□ -0.7
CD44-227ENST00000528086 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 LRRD1A4D1F6 860 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 CFAP69A5D8W1 941 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 TMEM202A6NGA9 273 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 KCNK1O00180 336 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 ALPIP09923 528 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 KRT10P13645 584 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 PECAM1P16284 738 aaPredicted RBP10.69□□□□□ -0.7
CD44-227ENST00000528086 JUNDP17535 347 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 CKMT2P17540 419 aa10.69□□□□□ -0.7
CD44-227ENST00000528086 CTPS1P17812 591 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms