RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 SFPQP23246 707 aaKnown RBP eCLIP4.76□□□□□ -1.65
USP48-211ENST00000526044 CCNE1P24864 410 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 CD38P28907 300 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 AXLP30530 894 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 HOXD13P35453 343 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 PTDSS1P48651 473 aaKnown RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 LIG4P49917 911 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 BCAT1P54687 386 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 CCL23P55773 120 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 STX17P56962 302 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 EEFSECP57772 596 aaKnown RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 NHLH1Q02575 133 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 MBTD1Q05BQ5 628 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 SIM2Q14190 667 aaPredicted RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 TPD52L1Q16890 204 aaPredicted RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 FAM187BQ17R55 369 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 CCDC142Q17RM4 750 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 TBC1D25Q3MII6 688 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 DPCR1Q3MIW9 517 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 FBXO47Q5MNV8 452 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 CACHD1Q5VU97 1274 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 ERAP2Q6P179 960 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 LRRC8DQ7L1W4 858 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 CREBRFQ8IUR6 639 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 TMEM199Q8N511 208 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 GOLGA5Q8TBA6 731 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 TMEM171Q8WVE6 324 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 NELFBQ8WX92 580 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 P2RX5Q93086 422 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 BICD1Q96G01 975 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 TSG101Q99816 390 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 C17orf80Q9BSJ5 609 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 FUCA2Q9BTY2 467 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 DPCDQ9BVM2 203 aaPredicted RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 FGFBP2Q9BYJ0 223 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 ZNF700Q9H0M5 742 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 MINDY3Q9H8M7 445 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 DUSP22Q9NRW4 184 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 CGNQ9P2M7 1197 aaKnown RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 DNMT3BQ9UBC3 853 aaKnown RBP4.76□□□□□ -1.65
USP48-211ENST00000526044 RWDD2AQ9UIY3 292 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 PADI3Q9ULW8 664 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 PADI4Q9UM07 663 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 TNFSF13BQ9Y275 285 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 DAAM1Q9Y4D1 1078 aa4.76□□□□□ -1.65
USP48-211ENST00000526044 ADGRA3Q8IWK6 1321 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 A0A1B0GUA9 196 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 DYTNA2CJ06 578 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 RHPN2P1A8MT19 583 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 BECN2A8MW95 431 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 H0YIZ8 118 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 GOLGA6L19H0YKK7 550 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 RAB27BO00194 218 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 PSMD9O00233 223 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 CETN3O15182 167 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 TGFB1I1O43294 461 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 RRP9O43818 475 aaKnown RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 TSPAN1O60635 241 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 NBNO60934 754 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 TOM1L1O75674 476 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 MT-ND5P03915 603 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 NR3C1P04150 777 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 HNRNPCP07910 306 aaKnown RBP eCLIP4.75□□□□□ -1.65
USP48-211ENST00000526044 GHRP10912 638 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 ENGP17813 658 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 ARF4P18085 180 aaPredicted RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 BTF3P20290 206 aaKnown RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 ACVR2AP27037 513 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 HOXA11P31270 313 aaPredicted RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 CD52P31358 61 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 RFC2P35250 354 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 TPTEP56180 551 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 TPM4P67936 248 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 FKBP3Q00688 224 aaKnown RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 LRRC63Q05C16 580 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 LPIN1Q14693 890 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 EDRF1Q3B7T1 1238 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 GRAMD1BQ3KR37 738 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 PCID2Q5JVF3 399 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 ATF7IP2Q5U623 682 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 SPATA1Q5VX52 437 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 SLC9A4Q6AI14 798 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 IL31Q6EBC2 164 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 ARMCX5Q6P1M9 558 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 NOTUMQ6P988 496 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 SLC29A4Q7RTT9 530 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 KCTD20Q7Z5Y7 419 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 AMIGO2Q86SJ2 522 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 CAND1Q86VP6 1230 aaKnown RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 FAM228AQ86W67 206 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 CSGALNACT2Q8N6G5 542 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 DNAJB14Q8TBM8 379 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 POMGNT1Q8WZA1 660 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 SEPT8Q92599 483 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 RSPRY1Q96DX4 576 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 ZNF764Q96H86 408 aaPredicted RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 CPB2Q96IY4 423 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 ZBTB45Q96K62 511 aaPredicted RBP4.75□□□□□ -1.65
USP48-211ENST00000526044 SNX22Q96L94 193 aa4.75□□□□□ -1.65
USP48-211ENST00000526044 BPIFA3Q9BQP9 254 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms