RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TAF12Q16514 161 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 HSP90AB4PQ58FF6 505 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 SGO1Q5FBB7 561 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 WBP2NLQ6ICG8 309 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 FOXRED2Q8IWF2 684 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 SPATA3Q8NHX4 192 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 CREB3L4Q8TEY5 395 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 SORCS1Q8WY21 1168 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 ZNF622Q969S3 477 aaKnown RBP eCLIP4.06□□□□□ -1.76
CD44-217ENST00000525348 IL17FQ96PD4 163 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 ESRP2Q9H6T0 727 aaKnown RBP4.06□□□□□ -1.76
CD44-217ENST00000525348 SMYD2Q9NRG4 433 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 RRN3Q9NYV6 651 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 CNOT7Q9UIV1 285 aaKnown RBP4.06□□□□□ -1.76
CD44-217ENST00000525348 ICAM5Q9UMF0 924 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 CARD8Q9Y2G2 431 aa4.06□□□□□ -1.76
CD44-217ENST00000525348 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.06□□□□□ -1.76
CD44-217ENST00000525348 EIF4G1Q04637 1599 aaKnown RBP4.06□□□□□ -1.76
CD44-217ENST00000525348 WDR81Q562E7 1941 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 MAGEA13PA6NCF6 341 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 BUB3O43684 328 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 ETFAP13804 333 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 AGAP20933 346 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 CHATP28329 748 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 HYAL1Q12794 435 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 DHX8Q14562 1220 aaKnown RBP4.05□□□□□ -1.76
CD44-217ENST00000525348 OASLQ15646 514 aaKnown RBP4.05□□□□□ -1.76
CD44-217ENST00000525348 CALCRLQ16602 461 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 KRTAP24-1Q3LI83 254 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 AMZ1Q400G9 498 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 ZNF628Q5EBL2 1059 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 C9orf50Q5SZB4 431 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 FBXO46Q6PJ61 603 aaPredicted RBP4.05□□□□□ -1.76
CD44-217ENST00000525348 NEK10Q6ZWH5 1172 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 MTSS1LQ765P7 747 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 ZNF329Q86UD4 541 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 SLC35F3Q8IY50 421 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 RFLNBQ8N5W9 214 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 ZNF441Q8N8Z8 693 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 RND1Q92730 232 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 SCLT1Q96NL6 688 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 SIN3AQ96ST3 1273 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 MPHOSPH8Q99549 860 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 FUZQ9BT04 418 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 HAUS8Q9BT25 410 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 KCNN2Q9H2S1 579 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 DONSONQ9NYP3 566 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 TINAGQ9UJW2 476 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 LAS1LQ9Y4W2 734 aaKnown RBP4.05□□□□□ -1.76
CD44-217ENST00000525348 SNX9Q9Y5X1 595 aa4.05□□□□□ -1.76
CD44-217ENST00000525348 GAGE10A6NGK3 116 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 ZNF587BE7ETH6 402 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 SOCS6O14544 535 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 BCAT2O15382 392 aaPredicted RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 GAGE7O76087 117 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 CAMTA2O94983 1202 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 CYC1P08574 325 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 GAGE12FP0CL80 117 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 GAGE12GP0CL81 117 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 GAGE12IP0CL82 117 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 SHMT1P34896 483 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 EIF2S3P41091 472 aaKnown RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 PEX5P50542 639 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 UFM1P61960 85 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 TLE2Q04725 743 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 GALNT2Q10471 571 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 ZNF155Q12901 538 aaPredicted RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 GAGE1Q13065 139 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 GAGE4Q13068 117 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 VEPH1Q14D04 833 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 RNPS1Q15287 305 aaKnown RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 ZRSR1Q15695 479 aaKnown RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 TXNDC8Q6A555 127 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 SATL1Q86VE3 508 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 TDRPQ86YL5 185 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 MUC20Q8N307 709 aaPredicted RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 OTULINQ96BN8 352 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 C3orf30Q96M34 536 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 BBS4Q96RK4 519 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 TKTL2Q9H0I9 626 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 LRRC4Q9HBW1 653 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 C1RLQ9NZP8 487 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 HCN3Q9P1Z3 774 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 LSM4Q9Y4Z0 139 aaKnown RBP4.04□□□□□ -1.76
CD44-217ENST00000525348 DCAF1Q9Y4B6 1507 aa4.04□□□□□ -1.76
CD44-217ENST00000525348 RRN3P2A6NIE6 340 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 TNPO2O14787 897 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 MID1O15344 667 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 NCAM2O15394 837 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 PLRG1O43660 514 aaKnown RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 GUCY1B2O75343 617 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 UMODP07911 640 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 MMP2P08253 660 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 F7P08709 466 aaPredicted RBP4.03□□□□□ -1.76
CD44-217ENST00000525348 MT3P25713 68 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 POU1F1P28069 291 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 ZBTB17Q13105 803 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 ITGADQ13349 1161 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 C2orf68Q2NKX9 166 aa4.03□□□□□ -1.76
CD44-217ENST00000525348 PRICKLE4Q2TBC4 344 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms