RNA–Protein interactions for RNA: ENST00000522963.5

PVT1-215, Transcript of Pvt1 oncogene, human

TSL 4

Gene PVT1, Length 568 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PVT1-215	ENST00000522963	WSB2	Q9NYS7	404 aa	Predicted RBP	12.01	□□□□□ -0.49
PVT1-215	ENST00000522963	GRHL1	Q9NZI5	618 aa		12.01	□□□□□ -0.49
PVT1-215	ENST00000522963	TPX2	Q9ULW0	747 aa	Known RBP	12.01	□□□□□ -0.49
PVT1-215	ENST00000522963	CHKB	Q9Y259	395 aa		12.01	□□□□□ -0.49
PVT1-215	ENST00000522963	LOC285095	A0A1B0GVY8	99 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ESYT3	A0FGR9	886 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	TSPAN11	A1L157	253 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	GOLGA6C	A6NDK9	693 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	GOLGA6B	A6NDN3	693 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ERI2	A8K979	691 aa	Known RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	C1QTNF3-AMACR	E9PGA6	284 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	KPNA3	O00505	521 aa	Predicted RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	TP73	O15350	636 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	USP12	O75317	370 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	TMEM63A	O94886	807 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	SUN1	O94901	812 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ADH1B	P00325	375 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ATXN1L	P0C7T5	689 aa	Known RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	GOLGA6D	P0CG33	693 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	TPSB2	P20231	275 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ITPKA	P23677	461 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	MAOB	P27338	520 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ACSL1	P33121	698 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	GRIA1	P42261	906 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	CHRNA4	P43681	627 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ITGA8	P53708	1063 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	DRG2	P55039	364 aa	Known RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	ZBTB16	Q05516	673 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	SF3A2	Q15428	464 aa	Known RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	TPSAB1	Q15661	275 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ZNF805	Q5CZA5	627 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	ARMC12	Q5T9G4	340 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	CCDC70	Q6NSX1	233 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	HIBCH	Q6NVY1	386 aa	Predicted RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	RANBP10	Q6VN20	620 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	PPIL6	Q8IXY8	311 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	SLC25A41	Q8N5S1	370 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	PDCD6IP	Q8WUM4	868 aa	Known RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	PIH1D2	Q8WWB5	315 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	FEM1C	Q96JP0	617 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	TBL1Y	Q9BQ87	522 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	BTBD1	Q9H0C5	482 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	MIR1-1HG	Q9H1L0	117 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	EPB41L5	Q9HCM4	733 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	SEMA4G	Q9NTN9	838 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	GOLGA6A	Q9NYA3	693 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	WHRN	Q9P202	907 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	SERGEF	Q9UGK8	458 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	PCDHB9	Q9Y5E1	797 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963		V9GYY5	206 aa	Predicted RBP	12	□□□□□ -0.49
PVT1-215	ENST00000522963	GVINP1	Q7Z2Y8	2422 aa		12	□□□□□ -0.49
PVT1-215	ENST00000522963	FSBP	O95073	299 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	SEMA4F	O95754	770 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	NDST3	O95803	873 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	CP	P00450	1065 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	EPO	P01588	193 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	C7	P10643	843 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	TIMP2	P16035	220 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	ITIH2	P19823	946 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	C5AR1	P21730	350 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	CA4	P22748	312 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	ITGB7	P26010	798 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	CDK16	Q00536	496 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	SFSWAP	Q12872	951 aa	Known RBP	11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	GALNT3	Q14435	633 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	SLC1A5	Q15758	541 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	FAM46C	Q5VWP2	391 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	TCEAL6	Q6IPX3	200 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	DENND5A	Q6IQ26	1287 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	ZDHHC24	Q6UX98	284 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	PARS2	Q7L3T8	475 aa	Known RBP	11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	PCGF5	Q86SE9	256 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	HOOK3	Q86VS8	718 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	SLC41A1	Q8IVJ1	513 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	LPCAT1	Q8NF37	534 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	OR14C36	Q8NHC7	312 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	HCAR2	Q8TDS4	363 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	TCEAL3	Q969E4	200 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	IFT43	Q96FT9	208 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	SMIM14	Q96QK8	99 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	FSD1L	Q9BXM9	530 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	NEUROG2	Q9H2A3	272 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	C6orf106	Q9H6K1	298 aa	Predicted RBP	11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	ANKZF1	Q9H8Y5	726 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	GDF3	Q9NR23	364 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	DKK3	Q9UBP4	350 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	ANAPC5	Q9UJX4	755 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	SCML1	Q9UN30	329 aa		11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	11.99	□□□□□ -0.49
PVT1-215	ENST00000522963	TNRC6B	Q9UPQ9	1833 aa	Known RBP	11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	C16orf96	A6NNT2	1141 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	PATE3	B3GLJ2	98 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	GOLGA8M	H3BSY2	632 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	PRKCG	P05129	697 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	CFI	P05156	583 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	HLA-DPA1	P20036	260 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	DRD3	P35462	400 aa		11.98	□□□□□ -0.49
PVT1-215	ENST00000522963	RPL26	P61254	145 aa	Known RBP	11.98	□□□□□ -0.49

Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms