RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 SLCO6A1Q86UG4 719 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 NT5DC3Q86UY8 548 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 NLRP8Q86W28 1048 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 RAVER1Q8IY67 606 aaKnown RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 BBS5Q8N3I7 341 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 CXorf40AQ8TE69 158 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 LRRN4Q8WUT4 740 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 NSMCE1Q8WV22 266 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 TBATAQ96M53 351 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 LYSMD1Q96S90 227 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 CDC6Q99741 560 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 SEMA3CQ99985 751 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 HERPUD2Q9BSE4 406 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 TDRD1Q9BXT4 1180 aaKnown RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 POLR1EQ9GZS1 481 aaKnown RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 CAAP1Q9H8G2 361 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 NT5MQ9NPB1 228 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 SCUBE2Q9NQ36 999 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 B4GALT6Q9UBX8 382 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 PHTF1Q9UMS5 762 aa9.76□□□□□ -0.85
RNF4-221ENST00000513643 GOLGA4Q13439 2230 aaKnown RBP9.76□□□□□ -0.85
RNF4-221ENST00000513643 TMEM131Q92545 1883 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 KCNK1O00180 336 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 NEMP1O14524 444 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 FPGTO14772 594 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 TNFSF14O43557 240 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 CST8O60676 142 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 PIAS2O75928 621 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 RECQL5O94762 991 aaPredicted RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 HEXIM1O94992 359 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 JCHAINP01591 159 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 KRT10P13645 584 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 PECAM1P16284 738 aaPredicted RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 TGM2P21980 687 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 LHCGRP22888 699 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 DGKAP23743 735 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 TEAD1P28347 426 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 GSDMDP57764 484 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 RPL26P61254 145 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 SIM1P81133 766 aaPredicted RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 SKOR1P84550 965 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 DSC2Q02487 901 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 WASHC5Q12768 1159 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 EIF2B5Q13144 721 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 TFDP2Q14188 446 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 LRRC14Q15048 493 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 SLC14A2Q15849 920 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 PROX2Q3B8N5 592 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 TEX44Q53QW1 395 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 ZNF662Q6ZS27 426 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 BBS12Q6ZW61 710 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 TECPR1Q7Z6L1 1165 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 DAAM2Q86T65 1068 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 GATAD2AQ86YP4 633 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 SPC24Q8NBT2 197 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 KIAA1524Q8TCG1 905 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 ADAMTS14Q8WXS8 1223 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 ALG3Q92685 438 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 FUBP1Q96AE4 644 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 IMP4Q96G21 291 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 TRIB3Q96RU7 358 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 MYOCQ99972 504 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 WRAP53Q9BUR4 548 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 TMEM121BQ9BXQ6 578 aaPredicted RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 MAK16Q9BXY0 300 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 SAE1Q9UBE0 346 aaPredicted RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 RPL26L1Q9UNX3 145 aaKnown RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 PCDHB9Q9Y5E1 797 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 HEY1Q9Y5J3 304 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 RAI2Q9Y5P3 530 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 ADGRG1Q9Y653 693 aa9.75□□□□□ -0.85
RNF4-221ENST00000513643 COL5A1P20908 1838 aaPredicted RBP9.75□□□□□ -0.85
RNF4-221ENST00000513643 USP24Q9UPU5 2620 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 LAMA5O15230 3695 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 MAP1BP46821 2468 aaKnown RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 A0A0J9YYE9 177 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 CCDC66A2RUB6 948 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 NPIPB15A6NHN6 443 aaPredicted RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 PSMD11O00231 422 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 TRIM38O00635 465 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 TRIM16O95361 564 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 TOP3BO95985 862 aaKnown RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 TRBC1P01850 177 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 ATXN1LP0C7T5 689 aaKnown RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 XPAP23025 273 aaPredicted RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 VIPR1P32241 457 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 CD68P34810 354 aaPredicted RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 IL9RQ01113 521 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 SEMG2Q02383 582 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 PTSQ03393 145 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 ZNF211Q13398 564 aaPredicted RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 XRCC4Q13426 336 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 PTPRRQ15256 657 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 IRF4Q15306 451 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 CNGA3Q16281 694 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 ARMC12Q5T9G4 340 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 ESRP1Q6NXG1 681 aaKnown RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 CRTC1Q6UUV9 634 aa9.74□□□□□ -0.85
RNF4-221ENST00000513643 BZW1Q7L1Q6 419 aaKnown RBP9.74□□□□□ -0.85
RNF4-221ENST00000513643 PARGQ86W56 976 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms