RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 BHMTQ93088 406 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MOCS1Q9NZB8 636 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 UXTQ9UBK9 157 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 FBXW11Q9UKB1 542 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 HCRTO43612 131 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 SNNO75324 88 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 SEC22BO75396 215 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 FGFR1P11362 822 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 PRKG2Q13237 762 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CCNIQ14094 377 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 NR1D2Q14995 579 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 PRAMEF19Q5SWL8 479 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 NKAPQ8N5F7 415 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ARFGAP1Q8N6T3 406 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 VPS37AQ8NEZ2 397 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 SENP6Q9GZR1 1112 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ACTR8Q9H981 624 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 IQCA1LA6NCM1 817 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 TMEM233B4DJY2 109 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 RAD51BO15315 384 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CD3EAPO15446 510 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MSI1O43347 362 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 DLX3O60479 287 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 USP2O75604 605 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MLYCDO95822 493 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 SCNN1AP37088 669 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 DAOAP59103 153 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MAP3K10Q02779 954 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 DDX39BQ13838 428 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ARHGEF7Q14155 803 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 RGS21Q2M5E4 152 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 BRMS1LQ5PSV4 323 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 RAP1GAP2Q684P5 730 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 TBC1D21Q8IYX1 336 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ZFP42Q96MM3 310 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ZYG11BQ9C0D3 744 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 TLR8Q9NR97 1041 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 PIGVQ9NUD9 493 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CPA4Q9UI42 421 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ANKRD36CQ5JPF3 1778 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MATN2O00339 956 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CCL22O00626 93 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC22A3O75751 556 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 CKMT2P17540 419 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ITGALP20701 1170 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 YWHAQP27348 245 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC10A2Q12908 348 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 MAD2L1Q13257 205 aaPredicted RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 PTPRNQ16849 979 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF618Q5T7W0 954 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 KIAA0408Q6ZU52 694 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 LGI2Q8N0V4 545 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 DQX1Q8TE96 717 aaKnown RBP8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 ASB9Q96DX5 294 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 INVSQ9Y283 1065 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 PCDHB5Q9Y5E4 795 aa8.44□□□□□ -1.06
LIMCH1-216ENST00000512820 H3BSA7 217 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM189A1O60320 539 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC1A2P43004 574 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ACAP2Q15057 778 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 MAPK11Q15759 364 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ZNF554Q86TJ5 538 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CCDC103Q8IW40 242 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CRYBG2Q8N1P7 616 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 BPIFB6Q8NFQ5 453 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 RNF217Q8TC41 542 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TWIST2Q8WVJ9 160 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM210AQ96ND0 272 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TSPAN18Q96SJ8 248 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 RAD21L1Q9H4I0 556 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 RIBC2Q9H4K1 309 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ELOVL6Q9H5J4 265 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 EPS8L2Q9H6S3 715 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 HMG20AQ9NP66 347 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 NMRK2Q9NPI5 230 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC13A4Q9UKG4 626 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TRPV2Q9Y5S1 764 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CBFA2T3O75081 653 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 OR6B1O95007 311 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 KCNH1O95259 989 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 KRT6AP02538 564 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 KRT6BP04259 564 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SLC7A1P30825 629 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CCR10P46092 362 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 KRT6CP48668 564 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CRYBB1P53674 252 aaPredicted RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 RHOAP61586 193 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 EPS8Q12929 822 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM187BQ17R55 369 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CNSTQ6PJW8 725 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SPESP1Q6UW49 350 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 GPRIN3Q6ZVF9 776 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 TAC4Q86UU9 113 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ZC3HC1Q86WB0 502 aaKnown RBP8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 FAM9CQ8IZT9 166 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 SEPT8Q92599 483 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 BORCS5Q969J3 196 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 DNAJC5Q9H3Z4 198 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 CXorf21Q9HAI6 301 aa8.43□□□□□ -1.06
LIMCH1-216ENST00000512820 ATP13A1Q9HD20 1204 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms