RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC4A5Q9BY07 1137 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 TIMMDC1Q9NPL8 285 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 IMP3Q9NV31 184 aaKnown RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CIDEBQ9UHD4 219 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CLUHO75153 1309 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CAMTA1Q9Y6Y1 1673 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 LINC00854A0A1B0GVQ3 168 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CD3EAPO15446 510 aaKnown RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 ZNF24P17028 368 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 ME2P23368 584 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 WASP42768 502 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CBX2Q14781 532 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 DGKKQ5KSL6 1271 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 RNF43Q68DV7 783 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 ZFP1Q6P2D0 407 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 FUT10Q6P4F1 479 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 BNIPLQ7Z465 357 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 PHYKPLQ8IUZ5 450 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 PHPT1Q9NRX4 125 aaPredicted RBP13.2□□□□□ -0.3
PTPRF-215ENST00000496447 CLIC5Q9NZA1 410 aa13.2□□□□□ -0.3
PTPRF-215ENST00000496447 SNX3O60493 162 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PEX10O60683 326 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PEX11AO75192 247 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 RPL3P39023 403 aaKnown RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 NAGLUP54802 743 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 CBX3Q13185 183 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 CHST9Q7L1S5 443 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 SIX5Q8N196 739 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 KLHL1Q9NR64 748 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 HBS1LQ9Y450 684 aaKnown RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PTPRJQ12913 1337 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 MYL12AP19105 171 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 LRPAP1P30533 357 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 WNT3AP56704 352 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 INTS6LQ5JSJ4 861 aaKnown RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 CREG2Q8IUH2 290 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 RAVER1Q8IY67 606 aaKnown RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 BEND7Q8N7W2 519 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 HEXDCQ8WVB3 486 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 UPF1Q92900 1129 aaKnown RBP eCLIP13.19□□□□□ -0.31e-7■■■■■ 44.5
PTPRF-215ENST00000496447 PPP3R2Q96LZ3 170 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 CDRT15Q96T59 188 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PDZD7Q9H5P4 517 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PCDH12Q9NPG4 1184 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 KLHL3Q9UH77 587 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 KCNE2Q9Y6J6 123 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 A0A087WXM4 84 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 MDM4O15151 490 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 TGFB1I1O43294 461 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 TSPAN1O60635 241 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 C1RP00736 705 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 CSNK2BP67870 215 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PRKCZQ05513 592 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 GPAT3Q53EU6 434 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 HDAC10Q969S8 669 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 BTBD9Q96Q07 612 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 DCUN1D5Q9BTE7 237 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 ARMCX1Q9P291 453 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 SLC28A1O00337 649 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 LGR5O75473 907 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 MFN2O95140 757 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 IL12RB1P42701 662 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 STX4Q12846 297 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 HDDC2Q7Z4H3 204 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 KCTD4Q8WVF5 259 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 FAM84AQ96KN4 292 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 TCF25Q9BQ70 676 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 EPB41L4BQ9H329 900 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 ZFP14Q9HCL3 533 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 TMEM191CA6NGB0 347 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 ERN1O75460 977 aaKnown RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 KRT33AO76009 404 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 EPHX1P07099 455 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 PIK3R1P27986 724 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 SLC5A3P53794 718 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 TSNQ15631 228 aaKnown RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 LACTB2Q53H82 288 aaPredicted RBP13.19□□□□□ -0.3
PTPRF-215ENST00000496447 FAAH2Q6GMR7 532 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 NETO2Q8NC67 525 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 SETD9Q8NE22 299 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 ARNTL2Q8WYA1 636 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 TIFAQ96CG3 184 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 MCRS1Q96EZ8 462 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 B3GNT5Q9BYG0 378 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 LHX5Q9H2C1 402 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 REEP1Q9H902 201 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 CYLDQ9NQC7 956 aa13.19□□□□□ -0.3
PTPRF-215ENST00000496447 SHOX2O60902 331 aaPredicted RBP13.18□□□□□ -0.3
PTPRF-215ENST00000496447 CCNDBP1O95273 360 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 OTCP00480 354 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 ARPC4P59998 168 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 ZDHHC20Q5W0Z9 365 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 CDC73Q6P1J9 531 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 GPRIN3Q6ZVF9 776 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 ZC3H7AQ8IWR0 971 aaKnown RBP13.18□□□□□ -0.3
PTPRF-215ENST00000496447 C12orf56Q8IXR9 622 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 LINGO1Q96FE5 620 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 GRIP2Q9C0E4 1043 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 MAF1Q9H063 256 aa13.18□□□□□ -0.3
PTPRF-215ENST00000496447 SLITRK2Q9H156 845 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms